Variant report

Variant	rs10497077
Chromosome Location	chr2:151897026-151897027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10497076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497078	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680352	0.96[ASN][1000 genomes]
rs11689630	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1351931	0.87[ASN][1000 genomes]
rs1351932	0.87[ASN][1000 genomes]
rs1385434	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463608	1.00[EUR][1000 genomes]
rs16829348	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16829371	0.96[ASN][1000 genomes]
rs1843272	0.87[ASN][1000 genomes]
rs2046421	0.83[ASN][1000 genomes]
rs2341932	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2880167	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7569554	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9752125	0.96[ASN][1000 genomes]
rs9789772	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151890600-151899600	Weak transcription	Osteobl	bone
2	chr2:151891400-151906400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:151895400-151898000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:151895400-151900000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:151896000-151898200	Enhancers	Fetal Lung	lung
6	chr2:151896000-151901000	Enhancers	HMEC	breast
7	chr2:151896200-151897600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:151896400-151897400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:151896400-151897600	Enhancers	NHEK	skin
10	chr2:151896600-151897800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:151897000-151905800	Weak transcription	NHLF	lung
12	chr2:151897000-151906000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:151897000-151906000	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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