Variant report

Variant	rs1351931
Chromosome Location	chr2:151931057-151931058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10167188	1.00[EUR][1000 genomes]
rs10497076	0.87[ASN][1000 genomes]
rs10497077	0.87[ASN][1000 genomes]
rs10497078	0.87[ASN][1000 genomes]
rs10754973	1.00[EUR][1000 genomes]
rs11680352	0.91[ASN][1000 genomes]
rs11689630	0.91[ASN][1000 genomes]
rs12478383	1.00[EUR][1000 genomes]
rs12692951	0.88[ASN][1000 genomes]
rs1351932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1351934	1.00[EUR][1000 genomes]
rs1351936	1.00[EUR][1000 genomes]
rs1385425	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1385427	0.84[ASN][1000 genomes]
rs1385433	1.00[EUR][1000 genomes]
rs1385434	0.87[ASN][1000 genomes]
rs1485100	1.00[EUR][1000 genomes]
rs1485114	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1485115	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1485119	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1485120	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1485123	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1485129	1.00[EUR][1000 genomes]
rs1485130	1.00[EUR][1000 genomes]
rs1586256	1.00[EUR][1000 genomes]
rs16829348	0.87[ASN][1000 genomes]
rs16829371	0.91[ASN][1000 genomes]
rs16829378	1.00[EUR][1000 genomes]
rs1843272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1843273	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1905750	1.00[EUR][1000 genomes]
rs1948024	1.00[EUR][1000 genomes]
rs2046421	0.95[ASN][1000 genomes]
rs2068842	0.83[ASN][1000 genomes]
rs2341847	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2341848	1.00[EUR][1000 genomes]
rs2880167	0.87[ASN][1000 genomes]
rs4664232	1.00[EUR][1000 genomes]
rs4664909	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4664910	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4664925	0.88[ASN][1000 genomes]
rs6433131	1.00[EUR][1000 genomes]
rs6433132	1.00[EUR][1000 genomes]
rs6433135	1.00[EUR][1000 genomes]
rs6705392	1.00[EUR][1000 genomes]
rs6761406	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7559502	0.91[ASN][1000 genomes]
rs7569554	0.91[ASN][1000 genomes]
rs7589036	1.00[EUR][1000 genomes]
rs9752125	0.91[ASN][1000 genomes]
rs9789772	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151927400-151941000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:151928400-151937400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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