Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11684212	0.92[EUR][1000 genomes]
rs11687405	0.92[EUR][1000 genomes]
rs11689630	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs11690051	0.92[EUR][1000 genomes]
rs11897895	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13010804	0.81[EUR][1000 genomes]
rs1351928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1351929	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1351931	0.88[ASN][1000 genomes]
rs1351932	0.88[ASN][1000 genomes]
rs1385424	0.94[EUR][1000 genomes]
rs1385427	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1385431	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1825498	0.87[EUR][1000 genomes]
rs1843272	0.88[ASN][1000 genomes]
rs1872389	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2046421	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2068842	0.88[ASN][1000 genomes]
rs4664925	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55936601	0.90[EUR][1000 genomes]
rs58394140	0.94[EUR][1000 genomes]
rs60972942	0.92[EUR][1000 genomes]
rs6433196	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73967499	0.92[EUR][1000 genomes]
rs7559502	1.00[CHB][hapmap]
rs936768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9789772	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151927400-151941000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:151937400-151941000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:151937800-151940800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:151938000-151941000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:151938200-151940400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:151938200-151940800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:151939400-151941600	Enhancers	Primary T cells from cord blood	blood
8	chr2:151939600-151940200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:151939600-151941400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:151939800-151941000	Enhancers	Brain Germinal Matrix	brain
11	chr2:151939800-151941400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr2:151939800-151941600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:151939800-151941600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:151939800-151941600	Enhancers	Fetal Brain Male	brain
15	chr2:151940000-151940200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:151940000-151940800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr2:151940000-151940800	Enhancers	Dnd41	blood
18	chr2:151940000-151942400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:151940000-151942800	Enhancers	Fetal Stomach	stomach

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