Variant report

Variant	rs1385424
Chromosome Location	chr2:151973422-151973423
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11683142	1.00[ASN][1000 genomes]
rs11683285	1.00[CHB][hapmap]
rs11684212	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686311	1.00[ASN][1000 genomes]
rs11687405	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690051	0.94[EUR][1000 genomes]
rs11897895	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692951	0.94[EUR][1000 genomes]
rs1351928	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1351929	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1385427	0.92[EUR][1000 genomes]
rs1385431	0.94[EUR][1000 genomes]
rs17796869	1.00[ASN][1000 genomes]
rs1825498	0.81[EUR][1000 genomes]
rs1872389	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046421	0.92[EUR][1000 genomes]
rs4664925	0.81[EUR][1000 genomes]
rs55936601	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58394140	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60972942	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73967499	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936768	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2762288	chr2:151970391-151983277	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151968800-151974800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:151970200-151973800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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