Variant report
| Variant | rs1351928 |
|---|---|
| Chromosome Location | chr2:151964499-151964500 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11683142 | 1.00[ASN][1000 genomes] |
| rs11683285 | 1.00[CHB][hapmap] |
| rs11684212 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11686311 | 1.00[ASN][1000 genomes] |
| rs11687405 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11690051 | 0.96[EUR][1000 genomes] |
| rs11897895 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12692951 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1351929 | 0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1385424 | 0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1385427 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1385431 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17796869 | 1.00[ASN][1000 genomes] |
| rs1825498 | 0.83[EUR][1000 genomes] |
| rs1872389 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2046421 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4664925 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs55936601 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58394140 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60972942 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6433196 | 0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73967499 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs936768 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525350 | chr2:151711700-152044794 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv523849 | chr2:151718133-152143524 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 3 | esv3693426 | chr2:151725792-152295862 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 4 | nsv1002140 | chr2:151833257-152054910 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:151963000-151964600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr2:151964400-151967600 | Weak transcription | NHDF-Ad | bronchial |
