Variant report

Variant	rs7559502
Chromosome Location	chr2:151909626-151909627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10497076	0.96[ASN][1000 genomes]
rs10497077	0.96[ASN][1000 genomes]
rs10497078	0.96[ASN][1000 genomes]
rs11680352	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13010804	0.95[EUR][1000 genomes]
rs1351931	0.91[ASN][1000 genomes]
rs1351932	0.91[ASN][1000 genomes]
rs1385434	0.96[ASN][1000 genomes]
rs16829348	0.96[ASN][1000 genomes]
rs16829371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1843272	0.91[ASN][1000 genomes]
rs2046421	0.87[ASN][1000 genomes]
rs2880167	0.96[ASN][1000 genomes]
rs58394140	0.82[EUR][1000 genomes]
rs7569554	1.00[ASN][1000 genomes]
rs9752125	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789772	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151906000-151910600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:151906000-151910800	Enhancers	NHDF-Ad	bronchial
3	chr2:151906400-151912600	Weak transcription	NHLF	lung
4	chr2:151908000-151910600	Enhancers	Osteobl	bone
5	chr2:151908400-151910000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:151908600-151912600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:151908600-151912600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:151909200-151910200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:151909400-151909800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:151909400-151910400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:151909400-151910600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:151909400-151910600	Enhancers	HMEC	breast
13	chr2:151909600-151910400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:151909600-151910400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:151909600-151910600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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