Variant report

Variant	rs10497494
Chromosome Location	chr2:178506883-178506884
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178497027..178498648-chr2:178505915..178508252,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10497495	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10497498	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1106074	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1527405	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1527408	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs16865443	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs16865444	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs16865446	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs16865448	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs16865449	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs16865452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16865453	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16865475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16865492	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16865501	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865509	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865514	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865524	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs2178018	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293472	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2293473	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2365618	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695317	0.85[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs3731803	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731804	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs3731806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3770018	0.82[JPT][hapmap]
rs3821003	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs3821004	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs3821005	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4144277	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5025339	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57000468	0.91[ASN][1000 genomes]
rs57401542	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57479066	0.91[ASN][1000 genomes]
rs57595473	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs58970701	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59275027	0.91[ASN][1000 genomes]
rs59963196	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60941291	0.91[ASN][1000 genomes]
rs61311927	0.86[ASN][1000 genomes]
rs61425825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61457959	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61570618	1.00[ASN][1000 genomes]
rs6745743	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6746845	0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs73977682	0.91[ASN][1000 genomes]
rs73977683	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv583689	chr2:178468008-178509820	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178504400-178507200	Enhancers	Fetal Brain Female	brain
2	chr2:178505200-178507400	Enhancers	Fetal Brain Male	brain
3	chr2:178505400-178507400	Enhancers	Fetal Lung	lung
4	chr2:178505600-178508800	Weak transcription	HepG2	liver
5	chr2:178506600-178507600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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