Variant report

Variant	rs16865492
Chromosome Location	chr2:178509820-178509821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178504748..178506835-chr2:178507451..178510364,2	K562	blood:
2	chr2:178507100..178511896-chr2:178515301..178517578,4	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10497494	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10497495	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10497498	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs1106074	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1527405	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs1527408	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs16865443	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs16865444	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs16865446	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs16865448	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs16865449	0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs16865452	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16865453	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16865475	0.94[JPT][hapmap]
rs16865501	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16865508	0.82[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16865509	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16865514	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16865524	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs2178018	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2293472	0.94[JPT][hapmap]
rs2293473	0.94[JPT][hapmap]
rs2365618	0.86[ASN][1000 genomes]
rs2695317	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs3731803	0.94[JPT][hapmap]
rs3731804	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs3731806	0.94[JPT][hapmap]
rs3770018	0.82[JPT][hapmap]
rs3821003	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs3821004	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs3821005	0.94[JPT][hapmap]
rs4144277	0.81[ASN][1000 genomes]
rs5025339	0.86[ASN][1000 genomes]
rs57479066	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58970701	0.86[ASN][1000 genomes]
rs59275027	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59963196	0.86[ASN][1000 genomes]
rs61311927	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61425825	0.86[ASN][1000 genomes]
rs61457959	0.86[ASN][1000 genomes]
rs61570618	0.86[ASN][1000 genomes]
rs6745743	0.89[ASW][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.80[MKK][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6746845	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];0.89[MEX][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73977682	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73977683	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv583689	chr2:178468008-178509820	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178509000-178516600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:178509600-178510400	Enhancers	K562	blood

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