Variant report

Variant	rs1527405
Chromosome Location	chr2:178525827-178525828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178518512..178521543-chr2:178525279..178528697,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10497494	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10497495	0.94[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs10497498	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap]
rs1106074	0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs12612481	0.82[ASW][hapmap];0.92[GIH][hapmap]
rs1527408	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865443	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs16865444	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs16865446	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap]
rs16865448	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs16865449	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs16865452	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16865453	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs16865475	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs16865492	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs16865501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16865508	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs16865509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16865514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16865524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2178018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2293472	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2293473	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[TSI][hapmap]
rs2365618	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2695317	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs3731803	1.00[CHB][hapmap]
rs3731804	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs3731806	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[TSI][hapmap]
rs3770008	0.82[ASW][hapmap];0.92[GIH][hapmap]
rs3770018	1.00[JPT][hapmap]
rs3770019	0.93[JPT][hapmap]
rs3770022	0.93[JPT][hapmap]
rs3821003	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap]
rs3821004	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap]
rs3821005	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[TSI][hapmap]
rs5025339	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57000468	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57401542	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57538850	0.89[EUR][1000 genomes]
rs57595473	0.97[ASN][1000 genomes]
rs58970701	0.87[ASN][1000 genomes]
rs59963196	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60941291	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61425825	0.87[ASN][1000 genomes]
rs61457959	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61570618	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6745743	0.82[CHB][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap]
rs6746845	0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7605757	0.92[GIH][hapmap]
rs9288008	0.93[JPT][hapmap]
rs9677333	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv431812	chr2:178525371-178584470	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178517200-178530800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:178524800-178532800	Weak transcription	Fetal Kidney	kidney
3	chr2:178524800-178533400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:178525200-178527600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:178525800-178526000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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