Variant report
| Variant | rs10497965 |
|---|---|
| Chromosome Location | chr2:213068580-213068581 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:52)
| rs_ID | r2[population] |
|---|---|
| rs10048673 | 0.92[CEU][hapmap] |
| rs10048750 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs10048796 | 0.89[CEU][hapmap] |
| rs10048819 | 0.89[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs10164682 | 1.00[JPT][hapmap] |
| rs10166172 | 0.92[CEU][hapmap] |
| rs10196229 | 0.89[CEU][hapmap] |
| rs10206443 | 0.89[CEU][hapmap] |
| rs10497963 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10497964 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10932425 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs11676942 | 0.82[EUR][1000 genomes] |
| rs11677095 | 0.82[EUR][1000 genomes] |
| rs11677623 | 0.93[CEU][hapmap] |
| rs11694300 | 0.82[EUR][1000 genomes] |
| rs12185587 | 0.80[CEU][hapmap] |
| rs12466455 | 1.00[CHB][hapmap] |
| rs12471395 | 1.00[CHB][hapmap] |
| rs12475565 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12477149 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12694267 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap] |
| rs12995889 | 1.00[JPT][hapmap] |
| rs13013744 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13022952 | 1.00[CHB][hapmap] |
| rs13407289 | 0.89[CEU][hapmap] |
| rs13415721 | 0.81[EUR][1000 genomes] |
| rs13424619 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13429136 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1357138 | 0.81[CEU][hapmap] |
| rs1402764 | 0.81[CEU][hapmap] |
| rs1467274 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1521643 | 0.81[EUR][1000 genomes] |
| rs1521644 | 0.81[EUR][1000 genomes] |
| rs1521645 | 0.81[EUR][1000 genomes] |
| rs1521649 | 0.92[CEU][hapmap] |
| rs1546719 | 0.96[CEU][hapmap] |
| rs1915747 | 0.91[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2049180 | 0.92[CEU][hapmap] |
| rs4350692 | 0.89[CEU][hapmap] |
| rs4375810 | 0.89[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs4638732 | 0.89[CEU][hapmap] |
| rs4673654 | 0.82[EUR][1000 genomes] |
| rs6435699 | 1.00[CHB][hapmap] |
| rs6707285 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6710350 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6713657 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs6725041 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6745249 | 0.81[CEU][hapmap] |
| rs7560301 | 0.82[EUR][1000 genomes] |
| rs9288447 | 0.83[CEU][hapmap] |
| rs939224 | 0.92[CEU][hapmap] |
| rs939226 | 0.83[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011572 | chr2:212840066-213152279 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv875805 | chr2:212891401-213164837 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875806 | chr2:212997024-213211067 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1001718 | chr2:213047033-213155985 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004823 | chr2:213052804-213181263 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv536138 | chr2:213052804-213181263 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv1006051 | chr2:213052804-213273642 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv875807 | chr2:213054058-213103721 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 9 | nsv584346 | chr2:213067749-213258622 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
