Variant report

Variant	rs12995889
Chromosome Location	chr2:213050763-213050764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10164682	1.00[JPT][hapmap]
rs10497963	1.00[JPT][hapmap]
rs10497964	1.00[JPT][hapmap]
rs10497965	1.00[JPT][hapmap]
rs10932425	1.00[JPT][hapmap]
rs12466094	1.00[YRI][hapmap]
rs12466455	1.00[YRI][hapmap]
rs12475565	1.00[JPT][hapmap]
rs12477149	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12694267	1.00[JPT][hapmap]
rs13013744	1.00[JPT][hapmap]
rs13017883	0.94[GIH][hapmap];0.94[TSI][hapmap]
rs13022952	1.00[YRI][hapmap]
rs1467274	1.00[JPT][hapmap]
rs6707285	1.00[JPT][hapmap]
rs6710350	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6713657	0.82[JPT][hapmap]
rs6725041	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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