Variant report

Variant	rs6707285
Chromosome Location	chr2:213067749-213067750
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10048673	0.92[CEU][hapmap];0.83[TSI][hapmap]
rs10048750	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs10048796	0.92[CEU][hapmap]
rs10048819	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10164682	1.00[JPT][hapmap]
rs10166172	0.84[ASW][hapmap];0.92[CEU][hapmap];0.83[TSI][hapmap]
rs10196229	0.92[CEU][hapmap]
rs10206443	0.92[CEU][hapmap]
rs10497963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10497964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10497965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11676942	0.82[EUR][1000 genomes]
rs11677095	0.82[EUR][1000 genomes]
rs11677623	0.92[CEU][hapmap]
rs11694300	0.82[EUR][1000 genomes]
rs12185587	0.83[CEU][hapmap]
rs12466455	1.00[CHB][hapmap]
rs12471395	1.00[CHB][hapmap]
rs12475565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12477149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12694267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12995889	1.00[JPT][hapmap]
rs13013744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs13022952	1.00[CHB][hapmap]
rs13407289	0.92[CEU][hapmap]
rs13408933	0.81[CEU][hapmap]
rs13415721	0.80[EUR][1000 genomes]
rs13424619	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13429136	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs1357138	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs1402764	0.84[CEU][hapmap]
rs1467274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1521634	0.81[CEU][hapmap]
rs1521643	0.80[EUR][1000 genomes]
rs1521644	0.80[EUR][1000 genomes]
rs1521645	0.80[EUR][1000 genomes]
rs1521649	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs1546719	0.96[CEU][hapmap]
rs1915747	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2049180	0.92[CEU][hapmap]
rs4350692	0.92[CEU][hapmap]
rs4375810	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4638732	0.92[CEU][hapmap]
rs4673654	0.82[EUR][1000 genomes]
rs6435699	1.00[CHB][hapmap]
rs6710350	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6713657	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6725041	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6745249	0.81[CEU][hapmap]
rs7560301	0.82[EUR][1000 genomes]
rs9288447	0.95[CEU][hapmap]
rs939224	0.92[CEU][hapmap]
rs939226	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv875807	chr2:213054058-213103721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv584346	chr2:213067749-213258622	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6707285	FN1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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