Variant report

Variant	rs10499056
Chromosome Location	chr6:110120630-110120631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110119585..110121731-chr6:110123236..110125799,2	K562	blood:
2	chr6:110120231..110121949-chr6:110122894..110124736,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4130817	1.00[ASN][1000 genomes]
rs4295520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4376385	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4407743	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73525129	1.00[ASN][1000 genomes]
rs73765005	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:110090000-110121000	Weak transcription	Ovary	ovary
4	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
5	chr6:110105600-110127800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:110106800-110127000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:110108000-110140200	Weak transcription	Fetal Brain Male	brain
8	chr6:110108200-110128000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:110108200-110131600	Weak transcription	Placenta	Placenta
10	chr6:110108200-110133200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:110110200-110121000	Weak transcription	Aorta	Aorta
12	chr6:110110200-110128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:110110400-110122400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:110110800-110137400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:110112000-110121000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:110112800-110124400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:110112800-110145400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:110114600-110126000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:110114600-110128200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:110114800-110121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:110115200-110126000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:110115200-110134800	Weak transcription	Liver	Liver
23	chr6:110115600-110123400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:110115800-110121000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:110115800-110121400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:110115800-110136000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:110115800-110137600	Weak transcription	Brain Anterior Caudate	brain
28	chr6:110115800-110144800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:110115800-110146000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:110115800-110155800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:110116000-110120800	Weak transcription	Stomach Mucosa	stomach
32	chr6:110116000-110121000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:110116000-110121600	Enhancers	Hela-S3	cervix
34	chr6:110116000-110129600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:110116000-110136200	Weak transcription	Brain Substantia Nigra	brain
36	chr6:110116000-110146000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:110116200-110120800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:110116200-110120800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:110116200-110120800	Weak transcription	HMEC	breast
40	chr6:110116200-110121000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:110116200-110121200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:110116200-110129200	Weak transcription	Psoas Muscle	Psoas
43	chr6:110116200-110131600	Weak transcription	Esophagus	oesophagus
44	chr6:110116200-110152000	Weak transcription	Colonic Mucosa	Colon
45	chr6:110116600-110121000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:110117000-110126800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:110117000-110128200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr6:110117200-110126200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr6:110117400-110124600	Strong transcription	Primary T cells from cord blood	blood
50	chr6:110117400-110148200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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