Variant report

Variant	rs73525129
Chromosome Location	chr6:110130288-110130289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10499056	1.00[ASN][1000 genomes]
rs17070970	0.84[AFR][1000 genomes]
rs17070972	0.84[AFR][1000 genomes]
rs17070984	0.84[AFR][1000 genomes]
rs34735897	0.84[AFR][1000 genomes]
rs4130817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295520	1.00[ASN][1000 genomes]
rs4376385	0.95[ASN][1000 genomes]
rs4407743	1.00[ASN][1000 genomes]
rs6935696	0.85[AFR][1000 genomes]
rs73765005	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
3	chr6:110108000-110140200	Weak transcription	Fetal Brain Male	brain
4	chr6:110108200-110131600	Weak transcription	Placenta	Placenta
5	chr6:110108200-110133200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:110110800-110137400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:110112800-110145400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:110115200-110134800	Weak transcription	Liver	Liver
9	chr6:110115800-110136000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:110115800-110137600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:110115800-110144800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:110115800-110146000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:110115800-110155800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:110116000-110136200	Weak transcription	Brain Substantia Nigra	brain
15	chr6:110116000-110146000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:110116200-110131600	Weak transcription	Esophagus	oesophagus
17	chr6:110116200-110152000	Weak transcription	Colonic Mucosa	Colon
18	chr6:110117400-110148200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:110117600-110131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:110117600-110132400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:110117600-110134800	Weak transcription	Left Ventricle	heart
22	chr6:110117600-110136400	Weak transcription	Lung	lung
23	chr6:110117600-110138200	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:110117600-110144800	Weak transcription	Spleen	Spleen
25	chr6:110117600-110152000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:110117600-110155400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:110117600-110159200	Weak transcription	Pancreas	Pancrea
28	chr6:110117800-110131200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:110118800-110134800	Weak transcription	Gastric	stomach
30	chr6:110118800-110134800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:110118800-110135000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:110118800-110141600	Weak transcription	Fetal Lung	lung
33	chr6:110118800-110146400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:110118800-110149800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:110118800-110152400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:110118800-110152400	Weak transcription	Thymus	Thymus
37	chr6:110119000-110145000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:110120800-110138400	Weak transcription	Brain Germinal Matrix	brain
39	chr6:110121200-110138000	Weak transcription	HSMM	muscle
40	chr6:110121200-110148800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:110121200-110150600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:110121400-110145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:110121400-110147600	Weak transcription	NHLF	lung
44	chr6:110121800-110134600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:110121800-110146200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:110122000-110142000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:110122200-110131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:110122200-110146200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:110122400-110134000	Weak transcription	Aorta	Aorta
50	chr6:110122600-110141200	Weak transcription	Fetal Stomach	stomach

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