Variant report

Variant	rs6935696
Chromosome Location	chr6:110127990-110127991
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10659	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17070970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17070972	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17070984	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34735897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4130817	0.85[AFR][1000 genomes]
rs4512266	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58730628	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs59180278	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60456575	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6933729	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73525129	0.85[AFR][1000 genomes]
rs73762801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765003	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765005	0.85[AFR][1000 genomes]
rs73765007	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765009	1.00[EUR][1000 genomes]
rs7744512	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
3	chr6:110108000-110140200	Weak transcription	Fetal Brain Male	brain
4	chr6:110108200-110128000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:110108200-110131600	Weak transcription	Placenta	Placenta
6	chr6:110108200-110133200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:110110200-110128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:110110800-110137400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:110112800-110145400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:110114600-110128200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:110115200-110134800	Weak transcription	Liver	Liver
12	chr6:110115800-110136000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:110115800-110137600	Weak transcription	Brain Anterior Caudate	brain
14	chr6:110115800-110144800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:110115800-110146000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:110115800-110155800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:110116000-110129600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:110116000-110136200	Weak transcription	Brain Substantia Nigra	brain
19	chr6:110116000-110146000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:110116200-110129200	Weak transcription	Psoas Muscle	Psoas
21	chr6:110116200-110131600	Weak transcription	Esophagus	oesophagus
22	chr6:110116200-110152000	Weak transcription	Colonic Mucosa	Colon
23	chr6:110117000-110128200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr6:110117400-110148200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:110117600-110131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:110117600-110132400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:110117600-110134800	Weak transcription	Left Ventricle	heart
28	chr6:110117600-110136400	Weak transcription	Lung	lung
29	chr6:110117600-110138200	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:110117600-110144800	Weak transcription	Spleen	Spleen
31	chr6:110117600-110152000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:110117600-110155400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:110117600-110159200	Weak transcription	Pancreas	Pancrea
34	chr6:110117800-110131200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:110118800-110134800	Weak transcription	Gastric	stomach
36	chr6:110118800-110134800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:110118800-110135000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:110118800-110141600	Weak transcription	Fetal Lung	lung
39	chr6:110118800-110146400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:110118800-110149800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:110118800-110152400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:110118800-110152400	Weak transcription	Thymus	Thymus
43	chr6:110119000-110145000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:110120800-110138400	Weak transcription	Brain Germinal Matrix	brain
45	chr6:110121000-110128200	Strong transcription	Primary B cells from cord blood	blood
46	chr6:110121200-110138000	Weak transcription	HSMM	muscle
47	chr6:110121200-110148800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:110121200-110150600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:110121400-110145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:110121400-110147600	Weak transcription	NHLF	lung

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