Variant report

Variant	rs58730628
Chromosome Location	chr6:110108063-110108064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10659	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17070970	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17070972	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17070984	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34735897	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4512266	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59180278	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60456575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6935696	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73762801	0.94[EUR][1000 genomes]
rs73765003	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73765007	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73765009	0.94[EUR][1000 genomes]
rs7744512	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
2	chr6:110036800-110115600	Weak transcription	Colonic Mucosa	Colon
3	chr6:110044200-110115400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:110058800-110112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:110065200-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:110081200-110109600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:110081600-110115000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:110082200-110119800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:110084200-110115400	Weak transcription	Small Intestine	intestine
12	chr6:110085600-110112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:110089400-110111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:110089600-110111400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:110089600-110115600	Weak transcription	Esophagus	oesophagus
16	chr6:110089600-110115600	Weak transcription	Gastric	stomach
17	chr6:110089800-110115200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:110090000-110108800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:110090000-110112400	Weak transcription	Fetal Stomach	stomach
20	chr6:110090000-110113600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:110090000-110114400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:110090000-110115400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:110090000-110115800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:110090000-110121000	Weak transcription	Ovary	ovary
25	chr6:110090200-110112200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:110090200-110115600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:110090200-110115600	Weak transcription	Pancreas	Pancrea
28	chr6:110090400-110112200	Weak transcription	Fetal Thymus	thymus
29	chr6:110090400-110114600	Weak transcription	Thymus	Thymus
30	chr6:110090400-110115200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
32	chr6:110093400-110115200	Weak transcription	Fetal Brain Female	brain
33	chr6:110094400-110114600	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:110094800-110117400	Weak transcription	Fetal Heart	heart
35	chr6:110095000-110111000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:110095000-110111200	Weak transcription	NH-A	brain
37	chr6:110095000-110115600	Weak transcription	Psoas Muscle	Psoas
38	chr6:110095000-110115600	Weak transcription	Spleen	Spleen
39	chr6:110099000-110109600	Weak transcription	Aorta	Aorta
40	chr6:110102800-110115600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:110103200-110114400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:110104600-110116200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr6:110104800-110109800	Weak transcription	Osteobl	bone
44	chr6:110105000-110111200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:110105000-110112400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:110105000-110114000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:110105200-110110000	Weak transcription	NHLF	lung
48	chr6:110105200-110110800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:110105200-110114200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr6:110105600-110116200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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