Variant report

Variant	rs6933729
Chromosome Location	chr6:110103003-110103004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:52677274..52679079-chr6:110101509..110103009,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10659	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13437149	1.00[CEU][hapmap]
rs17070874	1.00[CEU][hapmap]
rs17070970	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17070972	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17070984	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2076929	1.00[CEU][hapmap]
rs2295835	1.00[CEU][hapmap]
rs2295836	1.00[CEU][hapmap]
rs34735897	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3823235	1.00[CEU][hapmap]
rs4512266	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58730628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59180278	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60456575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6568587	1.00[CEU][hapmap]
rs6917383	1.00[CEU][hapmap]
rs6925005	1.00[CEU][hapmap]
rs6935696	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7356790	1.00[CEU][hapmap]
rs73762801	0.88[EUR][1000 genomes]
rs73765003	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73765007	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73765009	0.88[EUR][1000 genomes]
rs7742066	1.00[CEU][hapmap]
rs7744512	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7765916	1.00[CEU][hapmap]
rs7767805	1.00[CEU][hapmap]
rs9372226	1.00[CEU][hapmap]
rs9386835	1.00[CEU][hapmap]
rs9386842	1.00[CEU][hapmap]
rs9398214	1.00[CEU][hapmap]
rs9398215	1.00[CEU][hapmap]
rs9481003	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
2	chr6:110036800-110115600	Weak transcription	Colonic Mucosa	Colon
3	chr6:110044200-110115400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:110058800-110112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:110065200-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:110065800-110107400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:110065800-110107400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:110078800-110107400	Weak transcription	Fetal Brain Male	brain
10	chr6:110081200-110109600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:110081600-110115000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:110082200-110119800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:110084200-110115400	Weak transcription	Small Intestine	intestine
15	chr6:110085600-110112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:110086400-110104600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:110088400-110107600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:110089000-110107600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:110089400-110111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:110089600-110108000	Weak transcription	Brain Anterior Caudate	brain
21	chr6:110089600-110111400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:110089600-110115600	Weak transcription	Esophagus	oesophagus
23	chr6:110089600-110115600	Weak transcription	Gastric	stomach
24	chr6:110089800-110107200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:110089800-110107400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:110089800-110115200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:110090000-110107200	Weak transcription	Brain Germinal Matrix	brain
28	chr6:110090000-110107200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:110090000-110107400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:110090000-110108800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:110090000-110112400	Weak transcription	Fetal Stomach	stomach
32	chr6:110090000-110113600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:110090000-110114400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:110090000-110115400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:110090000-110115800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:110090000-110121000	Weak transcription	Ovary	ovary
37	chr6:110090200-110106800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:110090200-110106800	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:110090200-110107400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:110090200-110107600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:110090200-110112200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr6:110090200-110115600	Weak transcription	Fetal Intestine Small	intestine
43	chr6:110090200-110115600	Weak transcription	Pancreas	Pancrea
44	chr6:110090400-110106600	Weak transcription	Fetal Lung	lung
45	chr6:110090400-110106800	Weak transcription	Lung	lung
46	chr6:110090400-110112200	Weak transcription	Fetal Thymus	thymus
47	chr6:110090400-110114600	Weak transcription	Thymus	Thymus
48	chr6:110090400-110115200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
50	chr6:110091600-110106800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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