Variant report

Variant	rs73765009
Chromosome Location	chr6:110149067-110149068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10659	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17070970	1.00[EUR][1000 genomes]
rs17070972	1.00[EUR][1000 genomes]
rs17070984	1.00[EUR][1000 genomes]
rs34735897	1.00[EUR][1000 genomes]
rs4512266	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58730628	0.94[EUR][1000 genomes]
rs59180278	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60456575	0.94[EUR][1000 genomes]
rs6933729	0.88[EUR][1000 genomes]
rs6935696	1.00[EUR][1000 genomes]
rs73762801	1.00[EUR][1000 genomes]
rs73765003	1.00[EUR][1000 genomes]
rs73765007	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744512	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
3	chr6:110115800-110155800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:110116200-110152000	Weak transcription	Colonic Mucosa	Colon
5	chr6:110117600-110152000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:110117600-110155400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:110117600-110159200	Weak transcription	Pancreas	Pancrea
8	chr6:110118800-110149800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:110118800-110152400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:110118800-110152400	Weak transcription	Thymus	Thymus
11	chr6:110121200-110150600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:110126600-110152400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:110130000-110155800	Weak transcription	HSMMtube	muscle
14	chr6:110131800-110152400	Weak transcription	Esophagus	oesophagus
15	chr6:110132000-110149800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:110132400-110151800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:110134800-110155400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:110135600-110155800	Weak transcription	Gastric	stomach
19	chr6:110136600-110149200	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:110137000-110149200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:110137800-110155400	Weak transcription	Brain Angular Gyrus	brain
22	chr6:110137800-110155600	Weak transcription	Fetal Brain Female	brain
23	chr6:110138200-110154200	Weak transcription	Right Ventricle	heart
24	chr6:110138800-110155400	Weak transcription	Brain Germinal Matrix	brain
25	chr6:110139800-110154400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:110141400-110154400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:110142600-110155400	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:110143000-110155200	Weak transcription	Fetal Lung	lung
29	chr6:110144200-110150800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:110144400-110150600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr6:110144400-110151200	Strong transcription	Primary T cells from cord blood	blood
32	chr6:110144800-110150800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:110144800-110151200	Strong transcription	Adipose Nuclei	Adipose
34	chr6:110144800-110153400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:110145000-110150800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:110145200-110155200	Weak transcription	Fetal Heart	heart
37	chr6:110145400-110150400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:110145600-110151000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr6:110145800-110159400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:110146200-110149800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:110146600-110149200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr6:110146600-110151200	Weak transcription	Spleen	Spleen
43	chr6:110146600-110151400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:110146600-110155200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:110146600-110156000	Weak transcription	Left Ventricle	heart
46	chr6:110146800-110149600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:110146800-110149600	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:110146800-110150000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr6:110146800-110150200	Weak transcription	Brain Substantia Nigra	brain
50	chr6:110146800-110152600	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links