Variant report

Variant	rs4512266
Chromosome Location	chr6:110134940-110134941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10659	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13437149	1.00[CEU][hapmap]
rs17070874	1.00[CEU][hapmap]
rs17070970	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17070972	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17070984	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2076929	1.00[CEU][hapmap]
rs2295835	1.00[CEU][hapmap]
rs2295836	1.00[CEU][hapmap]
rs34735897	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823235	1.00[CEU][hapmap]
rs58730628	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59180278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60456575	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6568587	1.00[CEU][hapmap]
rs6917383	1.00[CEU][hapmap]
rs6925005	1.00[CEU][hapmap]
rs6933729	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6935696	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356790	1.00[CEU][hapmap]
rs73762801	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765003	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765009	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742066	1.00[CEU][hapmap]
rs7744512	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765916	1.00[CEU][hapmap]
rs7767805	1.00[CEU][hapmap]
rs9372226	1.00[CEU][hapmap]
rs9386835	1.00[CEU][hapmap]
rs9386842	1.00[CEU][hapmap]
rs9398214	1.00[CEU][hapmap]
rs9398215	1.00[CEU][hapmap]
rs9481003	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
3	chr6:110108000-110140200	Weak transcription	Fetal Brain Male	brain
4	chr6:110110800-110137400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:110112800-110145400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:110115800-110136000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:110115800-110137600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:110115800-110144800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:110115800-110146000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:110115800-110155800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:110116000-110136200	Weak transcription	Brain Substantia Nigra	brain
12	chr6:110116000-110146000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:110116200-110152000	Weak transcription	Colonic Mucosa	Colon
14	chr6:110117400-110148200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:110117600-110136400	Weak transcription	Lung	lung
16	chr6:110117600-110138200	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:110117600-110144800	Weak transcription	Spleen	Spleen
18	chr6:110117600-110152000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:110117600-110155400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:110117600-110159200	Weak transcription	Pancreas	Pancrea
21	chr6:110118800-110135000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:110118800-110141600	Weak transcription	Fetal Lung	lung
23	chr6:110118800-110146400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:110118800-110149800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:110118800-110152400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:110118800-110152400	Weak transcription	Thymus	Thymus
27	chr6:110119000-110145000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:110120800-110138400	Weak transcription	Brain Germinal Matrix	brain
29	chr6:110121200-110138000	Weak transcription	HSMM	muscle
30	chr6:110121200-110148800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:110121200-110150600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:110121400-110145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:110121400-110147600	Weak transcription	NHLF	lung
34	chr6:110121800-110146200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:110122000-110142000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:110122200-110146200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:110122600-110141200	Weak transcription	Fetal Stomach	stomach
38	chr6:110123400-110144200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:110125600-110145800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:110126600-110144400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:110126600-110152400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:110126800-110137400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:110128200-110136400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr6:110128200-110146000	Weak transcription	Fetal Intestine Small	intestine
45	chr6:110130000-110155800	Weak transcription	HSMMtube	muscle
46	chr6:110130600-110140800	Weak transcription	GM12878-XiMat	blood
47	chr6:110130800-110135400	Strong transcription	Primary B cells from cord blood	blood
48	chr6:110131800-110137800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr6:110131800-110141200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:110131800-110152400	Weak transcription	Esophagus	oesophagus

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