Variant report

Variant	rs6568587
Chromosome Location	chr6:109950646-109950647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 234 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:225)

rs_ID	r²[population]
rs10080533	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10434873	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10457201	0.92[ASN][1000 genomes]
rs1046943	0.85[YRI][hapmap]
rs1054607	0.95[YRI][hapmap]
rs10659	1.00[CEU][hapmap]
rs10872041	0.89[ASN][1000 genomes]
rs10872047	0.92[ASN][1000 genomes]
rs10872051	0.86[ASN][1000 genomes]
rs10872052	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1096139	0.87[ASN][1000 genomes]
rs1096140	0.87[ASN][1000 genomes]
rs1096142	0.87[ASN][1000 genomes]
rs1102924	0.87[ASN][1000 genomes]
rs11153193	0.83[ASN][1000 genomes]
rs11153200	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11153201	0.89[ASN][1000 genomes]
rs1115977	0.92[ASN][1000 genomes]
rs11505167	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11966009	0.85[ASN][1000 genomes]
rs11968485	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12215867	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12524352	0.90[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs12663674	0.89[ASN][1000 genomes]
rs1303981	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1321207	0.80[YRI][hapmap]
rs1321327	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13437149	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1358759	0.89[ASN][1000 genomes]
rs1406957	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1474959	0.91[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs1476387	0.80[YRI][hapmap]
rs1570011	0.92[ASN][1000 genomes]
rs1570012	0.92[ASN][1000 genomes]
rs1570013	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1575109	0.93[ASN][1000 genomes]
rs1590187	0.89[ASN][1000 genomes]
rs17070656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17070874	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs17070970	1.00[CEU][hapmap]
rs17070972	1.00[CEU][hapmap]
rs17070984	1.00[CEU][hapmap]
rs1885425	0.84[ASN][1000 genomes]
rs1967725	0.92[ASN][1000 genomes]
rs1969710	0.87[ASN][1000 genomes]
rs1969711	0.88[ASN][1000 genomes]
rs1985123	0.89[ASN][1000 genomes]
rs1998812	0.89[ASN][1000 genomes]
rs2016207	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2064820	0.89[ASN][1000 genomes]
rs2064821	0.81[ASN][1000 genomes]
rs2076929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2145144	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2236084	0.85[YRI][hapmap]
rs2277113	0.85[YRI][hapmap]
rs2295835	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes]
rs2295836	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs2357123	0.89[ASN][1000 genomes]
rs2357125	0.92[ASN][1000 genomes]
rs2357130	0.89[ASN][1000 genomes]
rs2884101	0.89[ASN][1000 genomes]
rs3734652	0.85[YRI][hapmap]
rs3799842	0.80[YRI][hapmap]
rs3823235	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4454170	0.89[ASN][1000 genomes]
rs4512266	1.00[CEU][hapmap]
rs4523125	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4946986	0.89[ASN][1000 genomes]
rs4946987	0.86[ASN][1000 genomes]
rs4946989	0.92[ASN][1000 genomes]
rs4946991	0.91[ASN][1000 genomes]
rs4946992	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4946996	0.89[ASN][1000 genomes]
rs4946999	0.89[ASN][1000 genomes]
rs4947003	0.89[ASN][1000 genomes]
rs4947009	0.84[ASN][1000 genomes]
rs60640103	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62435982	0.80[ASN][1000 genomes]
rs6568580	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs6568590	0.89[ASN][1000 genomes]
rs6568594	0.87[ASN][1000 genomes]
rs6568595	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6568596	0.84[ASN][1000 genomes]
rs67715693	0.86[ASN][1000 genomes]
rs6900091	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6916239	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6917383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917713	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917999	0.82[ASN][1000 genomes]
rs6918140	0.84[ASN][1000 genomes]
rs6920712	0.95[YRI][hapmap]
rs6924269	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6925005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6927075	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929823	0.92[ASN][1000 genomes]
rs6932271	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933729	1.00[CEU][hapmap]
rs6938499	0.82[ASN][1000 genomes]
rs731879	0.89[ASN][1000 genomes]
rs73535341	0.82[AMR][1000 genomes]
rs7356790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7450970	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7453835	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7454678	0.91[ASN][1000 genomes]
rs7740192	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742066	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes]
rs7743159	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7744512	1.00[CEU][hapmap]
rs7744981	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7745469	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7749386	0.92[ASN][1000 genomes]
rs7749605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7749910	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7751458	0.89[ASN][1000 genomes]
rs7753555	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754118	0.92[ASN][1000 genomes]
rs7754606	0.92[ASN][1000 genomes]
rs7761008	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7764783	0.89[ASN][1000 genomes]
rs7765265	0.89[ASN][1000 genomes]
rs7765916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7767805	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7768577	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829815	0.87[ASN][1000 genomes]
rs829816	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs829818	0.87[ASN][1000 genomes]
rs853544	0.87[ASN][1000 genomes]
rs910730	0.80[YRI][hapmap]
rs927127	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9320289	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9320292	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9320294	0.88[ASN][1000 genomes]
rs9320295	0.88[ASN][1000 genomes]
rs9320296	0.88[ASN][1000 genomes]
rs9320299	0.92[ASN][1000 genomes]
rs9320304	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9320305	0.92[ASN][1000 genomes]
rs9372216	0.92[ASN][1000 genomes]
rs9372221	0.84[ASN][1000 genomes]
rs9372222	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9372226	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs9374089	0.81[EUR][1000 genomes]
rs9374092	0.89[ASN][1000 genomes]
rs9374095	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9374097	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9374099	0.89[ASN][1000 genomes]
rs9374106	0.89[EUR][1000 genomes]
rs9374108	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9374110	1.00[CHB][hapmap]
rs9374113	0.89[ASN][1000 genomes]
rs9374114	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9374121	0.83[CHB][hapmap]
rs9384713	0.89[ASN][1000 genomes]
rs9384715	0.92[ASN][1000 genomes]
rs9384716	0.92[ASN][1000 genomes]
rs9384720	0.89[ASN][1000 genomes]
rs9386805	0.81[EUR][1000 genomes]
rs9386807	0.89[EUR][1000 genomes]
rs9386810	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386812	0.89[ASN][1000 genomes]
rs9386813	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9386816	0.90[ASN][1000 genomes]
rs9386817	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386818	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9386823	0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs9386824	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9386825	0.92[ASN][1000 genomes]
rs9386826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9386833	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386835	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes]
rs9386842	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs9398200	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9398204	0.88[ASN][1000 genomes]
rs9398205	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9398206	0.92[ASN][1000 genomes]
rs9398214	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs9398215	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes]
rs9400286	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9400291	0.89[ASN][1000 genomes]
rs9400294	0.89[ASN][1000 genomes]
rs9400295	0.89[ASN][1000 genomes]
rs9400299	0.89[EUR][1000 genomes]
rs9400301	0.92[ASN][1000 genomes]
rs9400307	0.82[ASN][1000 genomes]
rs9400310	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9400312	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9400313	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9400315	0.89[ASN][1000 genomes]
rs9400316	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs942923	0.89[ASN][1000 genomes]
rs942924	0.89[ASN][1000 genomes]
rs9480969	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480973	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9480974	0.89[ASN][1000 genomes]
rs9480976	0.89[ASN][1000 genomes]
rs9480982	0.91[ASN][1000 genomes]
rs9480984	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9480985	0.89[ASN][1000 genomes]
rs9480986	0.89[ASN][1000 genomes]
rs9480987	0.84[ASN][1000 genomes]
rs9480990	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480991	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9481003	0.82[CEU][hapmap]
rs9487103	0.81[YRI][hapmap]
rs9487141	0.89[ASN][1000 genomes]
rs9487148	0.86[ASN][1000 genomes]
rs9487156	0.92[ASN][1000 genomes]
rs9487160	0.90[ASN][1000 genomes]
rs9487164	0.91[ASN][1000 genomes]
rs9487170	0.92[ASN][1000 genomes]
rs9487171	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9487172	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9487175	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9487176	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9487178	0.89[ASN][1000 genomes]
rs9487179	0.82[ASN][1000 genomes]
rs9487180	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9487183	0.84[ASN][1000 genomes]
rs9487186	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487193	0.91[AMR][1000 genomes]
rs971432	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs971433	0.89[ASN][1000 genomes]
rs9791241	0.85[YRI][hapmap]
rs9986423	0.89[ASN][1000 genomes]
rs9986507	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109923600-109952600	Weak transcription	Right Ventricle	heart
2	chr6:109928000-109966400	Weak transcription	Pancreas	Pancrea
3	chr6:109933000-109962800	Weak transcription	Left Ventricle	heart
4	chr6:109933000-109966400	Weak transcription	Brain Germinal Matrix	brain
5	chr6:109933000-109985200	Weak transcription	Psoas Muscle	Psoas
6	chr6:109933800-109951400	Weak transcription	Primary B cells from cord blood	blood
7	chr6:109945400-109966400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:109947200-109966800	Weak transcription	Gastric	stomach
9	chr6:109947400-109961200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:109948000-109952600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:109948000-109995000	Weak transcription	Brain Anterior Caudate	brain
12	chr6:109948800-109950800	Enhancers	Primary T cells from cord blood	blood
13	chr6:109948800-109950800	Enhancers	Fetal Thymus	thymus
14	chr6:109948800-109950800	Enhancers	Thymus	Thymus
15	chr6:109949600-109961200	Weak transcription	Lung	lung
16	chr6:109949600-109961200	Weak transcription	Spleen	Spleen
17	chr6:109949800-109951800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:109949800-109952800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:109949800-109954600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:109949800-109956400	Weak transcription	Aorta	Aorta
21	chr6:109949800-109961200	Weak transcription	Fetal Brain Female	brain
22	chr6:109950200-109952800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:109950200-109957800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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