Variant report

Variant	rs9480969
Chromosome Location	chr6:109839117-109839118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:196)

rs_ID	r²[population]
rs10080533	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10434873	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457201	0.92[ASN][1000 genomes]
rs1046943	0.80[YRI][hapmap]
rs1054607	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs10872041	0.95[ASN][1000 genomes]
rs10872047	0.92[ASN][1000 genomes]
rs10872051	0.81[ASN][1000 genomes]
rs10872052	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1096139	0.82[ASN][1000 genomes]
rs1096140	0.82[ASN][1000 genomes]
rs1096142	0.82[ASN][1000 genomes]
rs1102924	0.82[ASN][1000 genomes]
rs11153193	0.83[ASN][1000 genomes]
rs11153200	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11153201	0.84[ASN][1000 genomes]
rs1115977	0.92[ASN][1000 genomes]
rs11505167	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11966009	0.90[ASN][1000 genomes]
rs11968485	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12215867	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12524352	0.90[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs12663674	0.84[ASN][1000 genomes]
rs1303981	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321327	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1358759	0.95[ASN][1000 genomes]
rs1406957	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1474959	0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs1570011	0.92[ASN][1000 genomes]
rs1570012	0.92[ASN][1000 genomes]
rs1570013	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1575109	0.88[ASN][1000 genomes]
rs1590187	0.95[ASN][1000 genomes]
rs17070656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967725	0.92[ASN][1000 genomes]
rs1969710	0.87[ASN][1000 genomes]
rs1969711	0.88[ASN][1000 genomes]
rs1985123	0.95[ASN][1000 genomes]
rs1998812	0.95[ASN][1000 genomes]
rs2016207	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2064820	0.95[ASN][1000 genomes]
rs2064821	0.84[ASN][1000 genomes]
rs2076929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2145144	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2236084	0.80[YRI][hapmap]
rs2275651	0.81[EUR][1000 genomes]
rs2295835	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[YRI][hapmap]
rs2357123	0.95[ASN][1000 genomes]
rs2357125	0.92[ASN][1000 genomes]
rs2357130	0.84[ASN][1000 genomes]
rs2884101	0.84[ASN][1000 genomes]
rs3734652	0.80[YRI][hapmap]
rs3823235	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes]
rs4454170	0.84[ASN][1000 genomes]
rs4523125	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4946986	0.95[ASN][1000 genomes]
rs4946987	0.91[ASN][1000 genomes]
rs4946989	0.92[ASN][1000 genomes]
rs4946991	0.91[ASN][1000 genomes]
rs4946992	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4946996	0.84[ASN][1000 genomes]
rs4946999	0.84[ASN][1000 genomes]
rs4947003	0.84[ASN][1000 genomes]
rs60640103	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568580	0.91[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs6568587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6568590	0.84[ASN][1000 genomes]
rs6568594	0.82[ASN][1000 genomes]
rs6568595	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs67715693	0.86[ASN][1000 genomes]
rs6900091	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6916239	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6916639	0.80[ASN][1000 genomes]
rs6917383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6917713	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917999	0.82[ASN][1000 genomes]
rs6920712	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs6924269	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6925005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6927075	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929823	0.92[ASN][1000 genomes]
rs6932271	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6938499	0.82[ASN][1000 genomes]
rs731879	0.84[ASN][1000 genomes]
rs7356790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7450970	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7453835	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7454678	0.91[ASN][1000 genomes]
rs7740192	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7742066	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[YRI][hapmap]
rs7743159	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7744981	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7745469	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7749386	0.92[ASN][1000 genomes]
rs7749605	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7749910	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7751458	0.84[ASN][1000 genomes]
rs7753555	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7754118	0.92[ASN][1000 genomes]
rs7754606	0.92[ASN][1000 genomes]
rs7761008	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7764783	0.84[ASN][1000 genomes]
rs7765265	0.84[ASN][1000 genomes]
rs7765916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7767805	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7768577	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829815	0.82[ASN][1000 genomes]
rs829816	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs829818	0.82[ASN][1000 genomes]
rs853544	0.82[ASN][1000 genomes]
rs927127	1.00[EUR][1000 genomes]
rs9320289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320294	0.93[ASN][1000 genomes]
rs9320295	0.93[ASN][1000 genomes]
rs9320296	0.93[ASN][1000 genomes]
rs9320299	0.92[ASN][1000 genomes]
rs9320304	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9320305	0.92[ASN][1000 genomes]
rs9372216	0.92[ASN][1000 genomes]
rs9372222	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9374089	0.81[EUR][1000 genomes]
rs9374092	0.95[ASN][1000 genomes]
rs9374095	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9374097	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9374099	0.95[ASN][1000 genomes]
rs9374106	0.89[EUR][1000 genomes]
rs9374108	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9374110	1.00[CHB][hapmap]
rs9374113	0.84[ASN][1000 genomes]
rs9374114	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9384713	0.95[ASN][1000 genomes]
rs9384715	0.92[ASN][1000 genomes]
rs9384716	0.92[ASN][1000 genomes]
rs9384720	0.84[ASN][1000 genomes]
rs9386805	0.81[EUR][1000 genomes]
rs9386807	0.89[EUR][1000 genomes]
rs9386810	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386812	0.95[ASN][1000 genomes]
rs9386813	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9386816	0.90[ASN][1000 genomes]
rs9386817	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386818	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9386823	0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs9386824	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9386825	0.92[ASN][1000 genomes]
rs9386826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9386833	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386835	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[YRI][hapmap]
rs9398200	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9398204	0.93[ASN][1000 genomes]
rs9398205	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398206	0.92[ASN][1000 genomes]
rs9400279	0.81[EUR][1000 genomes]
rs9400286	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9400287	0.83[AFR][1000 genomes]
rs9400291	0.95[ASN][1000 genomes]
rs9400293	0.83[ASN][1000 genomes]
rs9400294	0.95[ASN][1000 genomes]
rs9400295	0.95[ASN][1000 genomes]
rs9400299	0.89[EUR][1000 genomes]
rs9400301	0.92[ASN][1000 genomes]
rs9400310	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9400312	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9400313	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9400315	0.84[ASN][1000 genomes]
rs9400316	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs942923	0.95[ASN][1000 genomes]
rs942924	0.95[ASN][1000 genomes]
rs9480973	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9480974	0.95[ASN][1000 genomes]
rs9480976	0.95[ASN][1000 genomes]
rs9480982	0.91[ASN][1000 genomes]
rs9480984	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9480985	0.84[ASN][1000 genomes]
rs9480986	0.84[ASN][1000 genomes]
rs9480990	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9480991	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9487141	0.95[ASN][1000 genomes]
rs9487148	0.91[ASN][1000 genomes]
rs9487156	0.92[ASN][1000 genomes]
rs9487160	0.90[ASN][1000 genomes]
rs9487164	0.91[ASN][1000 genomes]
rs9487170	0.92[ASN][1000 genomes]
rs9487171	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9487172	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9487175	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9487176	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9487178	0.84[ASN][1000 genomes]
rs9487180	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9487186	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs971432	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs971433	0.84[ASN][1000 genomes]
rs9791241	0.80[YRI][hapmap]
rs9986423	0.84[ASN][1000 genomes]
rs9986507	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109835400-109851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:109835600-109844400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:109837400-109839200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:109837400-109842600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:109837800-109839200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:109837800-109842800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:109838000-109842000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:109838400-109839400	Enhancers	Dnd41	blood
9	chr6:109838400-109842000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:109838400-109842200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:109838600-109839400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:109838600-109840600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:109838600-109861400	Weak transcription	Thymus	Thymus
14	chr6:109839000-109844600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:109839000-109848200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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