Variant report

Variant	rs829818
Chromosome Location	chr6:110000090-110000091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 238 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:233)

rs_ID	r²[population]
rs10434873	0.82[ASN][1000 genomes]
rs10457201	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872035	0.84[EUR][1000 genomes]
rs10872041	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872047	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872051	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10872052	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1096138	0.83[EUR][1000 genomes]
rs1096139	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1096140	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1096142	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102924	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153193	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11153194	0.87[EUR][1000 genomes]
rs11153195	0.83[EUR][1000 genomes]
rs11153200	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11153201	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1115977	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11505167	0.84[ASN][1000 genomes]
rs11966009	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11968485	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12204769	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12207793	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12211805	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12211987	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12215867	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12524352	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12663674	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1303981	0.82[ASN][1000 genomes]
rs1321327	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1358759	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1406957	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1474959	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1570011	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1570012	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1570013	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1575108	0.90[EUR][1000 genomes]
rs1575109	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1590187	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17070656	0.82[ASN][1000 genomes]
rs1885425	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1967725	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1969710	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1969711	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1985123	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1998812	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2016207	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2064820	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2076929	0.92[ASN][1000 genomes]
rs2093097	0.87[EUR][1000 genomes]
rs2145144	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2208210	0.88[EUR][1000 genomes]
rs2357123	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2357125	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2357128	0.88[EUR][1000 genomes]
rs2357129	0.82[EUR][1000 genomes]
rs2357130	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884101	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4273727	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4454170	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4523125	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4591898	0.89[EUR][1000 genomes]
rs4607459	0.81[EUR][1000 genomes]
rs4946986	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946987	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4946989	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4946991	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4946992	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4946993	0.88[EUR][1000 genomes]
rs4946995	0.80[EUR][1000 genomes]
rs4946996	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4946997	0.82[EUR][1000 genomes]
rs4946998	0.82[EUR][1000 genomes]
rs4946999	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4947003	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4947004	0.84[EUR][1000 genomes]
rs4947006	0.84[EUR][1000 genomes]
rs4947009	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60640103	0.82[ASN][1000 genomes]
rs62435981	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62435982	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6568580	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6568587	0.87[ASN][1000 genomes]
rs6568590	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568591	0.83[EUR][1000 genomes]
rs6568593	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6568594	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568595	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568596	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568598	0.80[EUR][1000 genomes]
rs6568600	0.82[EUR][1000 genomes]
rs6568602	0.80[EUR][1000 genomes]
rs67715693	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6900091	0.92[ASN][1000 genomes]
rs6910388	0.80[AMR][1000 genomes]
rs6916239	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6917383	0.92[ASN][1000 genomes]
rs6917713	0.84[ASN][1000 genomes]
rs6917999	0.85[EUR][1000 genomes]
rs6918140	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6922784	0.90[EUR][1000 genomes]
rs6924269	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925005	0.84[ASN][1000 genomes]
rs6927075	0.84[ASN][1000 genomes]
rs6929823	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6932271	0.84[ASN][1000 genomes]
rs6938499	0.86[EUR][1000 genomes]
rs71541004	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs731879	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7356790	0.92[ASN][1000 genomes]
rs7450970	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7453835	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7454678	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7454858	0.88[EUR][1000 genomes]
rs7740192	0.92[ASN][1000 genomes]
rs7743159	0.95[ASN][1000 genomes]
rs7744981	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7745406	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7745469	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749386	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749605	0.92[ASN][1000 genomes]
rs7749910	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7751458	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7752445	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7753555	0.92[ASN][1000 genomes]
rs7754118	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7754606	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7761008	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7764783	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7765265	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7765916	0.95[ASN][1000 genomes]
rs7767805	0.95[ASN][1000 genomes]
rs7768577	0.84[ASN][1000 genomes]
rs829813	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829814	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs829815	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829816	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829817	0.84[EUR][1000 genomes]
rs853544	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911022	0.84[EUR][1000 genomes]
rs911023	0.84[EUR][1000 genomes]
rs9320289	0.82[ASN][1000 genomes]
rs9320292	0.82[ASN][1000 genomes]
rs9320294	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9320295	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9320296	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9320299	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9320304	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9320305	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9372216	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9372220	0.80[EUR][1000 genomes]
rs9372221	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9372222	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374092	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374094	0.83[EUR][1000 genomes]
rs9374095	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374097	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374098	0.87[EUR][1000 genomes]
rs9374099	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374108	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9374110	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9374113	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374114	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384713	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9384715	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9384716	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9384717	0.88[EUR][1000 genomes]
rs9384720	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386810	0.82[ASN][1000 genomes]
rs9386812	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386813	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386816	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386817	0.84[ASN][1000 genomes]
rs9386818	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386820	0.86[EUR][1000 genomes]
rs9386823	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386824	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386825	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386826	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386833	0.92[ASN][1000 genomes]
rs9398204	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398205	0.82[ASN][1000 genomes]
rs9398206	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9400288	0.84[EUR][1000 genomes]
rs9400291	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9400293	0.85[EUR][1000 genomes]
rs9400294	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9400295	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9400301	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9400307	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9400310	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400312	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400314	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9400315	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400316	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs942923	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs942924	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9480969	0.82[ASN][1000 genomes]
rs9480973	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9480974	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9480976	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9480982	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9480984	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480985	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480986	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480987	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9480990	0.92[ASN][1000 genomes]
rs9480991	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487141	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487148	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9487152	0.87[EUR][1000 genomes]
rs9487153	0.85[EUR][1000 genomes]
rs9487156	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9487160	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487164	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487168	0.83[EUR][1000 genomes]
rs9487169	0.86[EUR][1000 genomes]
rs9487170	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9487171	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487172	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487175	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9487176	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487178	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487179	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9487180	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487183	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9487186	0.95[ASN][1000 genomes]
rs971432	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs971433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9968792	0.81[EUR][1000 genomes]
rs9986423	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9986507	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs829818	SMPD2	cis	Whole Blood	GTEx
rs829818	C6orf199	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109961400-110000800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:109961600-110000600	Weak transcription	Thymus	Thymus
3	chr6:109965200-110000600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:109978000-110010600	Weak transcription	Brain Germinal Matrix	brain
5	chr6:109979600-110000600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:109980600-110011200	Weak transcription	Fetal Thymus	thymus
7	chr6:109983600-110000800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:109985200-110000800	Weak transcription	Spleen	Spleen
9	chr6:109989400-110011400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:109990000-110010600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:109991400-110007200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:109991400-110010600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:109992000-110011200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:109992400-110011400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:109994400-110001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:109998400-110010800	Weak transcription	Primary B cells from cord blood	blood
17	chr6:109999600-110000800	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr6:109999600-110000800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr6:109999600-110000800	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:109999800-110000400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr6:109999800-110000600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr6:109999800-110000600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr6:109999800-110000800	Active TSS	Pancreas	Pancrea
24	chr6:109999800-110001000	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr6:110000000-110000200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:110000000-110000200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:110000000-110000200	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr6:110000000-110000200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:110000000-110000400	Enhancers	Left Ventricle	heart
30	chr6:110000000-110000800	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:110000000-110001000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links