Variant report

Variant	rs7743159
Chromosome Location	chr6:110005068-110005069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 193 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs10080533	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10434873	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10457201	0.84[ASN][1000 genomes]
rs10872041	0.82[ASN][1000 genomes]
rs10872047	0.84[ASN][1000 genomes]
rs10872051	0.88[ASN][1000 genomes]
rs10872052	0.92[ASN][1000 genomes]
rs1096139	0.95[ASN][1000 genomes]
rs1096140	0.95[ASN][1000 genomes]
rs1096142	0.95[ASN][1000 genomes]
rs1102924	0.95[ASN][1000 genomes]
rs11153200	0.92[ASN][1000 genomes]
rs11153201	0.92[ASN][1000 genomes]
rs1115977	0.84[ASN][1000 genomes]
rs11505167	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968485	0.92[ASN][1000 genomes]
rs12215867	0.92[ASN][1000 genomes]
rs12524352	0.84[ASN][1000 genomes]
rs12663674	0.92[ASN][1000 genomes]
rs1303981	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1358759	0.82[ASN][1000 genomes]
rs1406957	0.92[ASN][1000 genomes]
rs1474959	0.84[ASN][1000 genomes]
rs1570011	0.84[ASN][1000 genomes]
rs1570012	0.84[ASN][1000 genomes]
rs1570013	0.87[ASN][1000 genomes]
rs1575109	0.86[ASN][1000 genomes]
rs1590187	0.82[ASN][1000 genomes]
rs17070656	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17070874	0.82[AMR][1000 genomes]
rs1885425	0.92[ASN][1000 genomes]
rs1967725	0.84[ASN][1000 genomes]
rs1969710	0.82[ASN][1000 genomes]
rs1969711	0.81[ASN][1000 genomes]
rs1985123	0.82[ASN][1000 genomes]
rs1998812	0.82[ASN][1000 genomes]
rs2016207	0.92[ASN][1000 genomes]
rs2064820	0.82[ASN][1000 genomes]
rs2076929	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2145144	0.92[ASN][1000 genomes]
rs2295835	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2357123	0.82[ASN][1000 genomes]
rs2357125	0.84[ASN][1000 genomes]
rs2357130	0.92[ASN][1000 genomes]
rs2884101	0.92[ASN][1000 genomes]
rs3823235	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4454170	0.92[ASN][1000 genomes]
rs4523125	0.84[ASN][1000 genomes]
rs4946986	0.82[ASN][1000 genomes]
rs4946989	0.84[ASN][1000 genomes]
rs4946991	0.83[ASN][1000 genomes]
rs4946992	0.84[ASN][1000 genomes]
rs4946996	0.92[ASN][1000 genomes]
rs4946999	0.92[ASN][1000 genomes]
rs4947003	0.92[ASN][1000 genomes]
rs4947009	0.89[ASN][1000 genomes]
rs60640103	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62435982	0.83[ASN][1000 genomes]
rs6568580	0.82[ASN][1000 genomes]
rs6568587	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6568590	0.92[ASN][1000 genomes]
rs6568593	0.88[ASN][1000 genomes]
rs6568594	0.95[ASN][1000 genomes]
rs6568595	0.95[ASN][1000 genomes]
rs6568596	0.92[ASN][1000 genomes]
rs6900091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6916239	0.80[ASN][1000 genomes]
rs6917383	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917713	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6918140	0.92[ASN][1000 genomes]
rs6924269	0.92[ASN][1000 genomes]
rs6925005	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6927075	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6929823	0.84[ASN][1000 genomes]
rs6932271	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71541004	0.82[ASN][1000 genomes]
rs731879	0.92[ASN][1000 genomes]
rs73535341	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7356790	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7450970	0.92[ASN][1000 genomes]
rs7453835	0.84[ASN][1000 genomes]
rs7454678	0.83[ASN][1000 genomes]
rs7740192	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7740332	0.90[AFR][1000 genomes]
rs7742066	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7744981	0.92[ASN][1000 genomes]
rs7745469	0.92[ASN][1000 genomes]
rs7749386	0.84[ASN][1000 genomes]
rs7749605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749910	0.92[ASN][1000 genomes]
rs7751458	0.92[ASN][1000 genomes]
rs7753555	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7754118	0.84[ASN][1000 genomes]
rs7754606	0.84[ASN][1000 genomes]
rs7761008	0.92[ASN][1000 genomes]
rs7764783	0.92[ASN][1000 genomes]
rs7765265	0.92[ASN][1000 genomes]
rs7765916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767805	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768577	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs829815	0.95[ASN][1000 genomes]
rs829816	0.95[ASN][1000 genomes]
rs829818	0.95[ASN][1000 genomes]
rs853544	0.95[ASN][1000 genomes]
rs927127	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9320289	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9320292	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9320294	0.81[ASN][1000 genomes]
rs9320295	0.81[ASN][1000 genomes]
rs9320296	0.81[ASN][1000 genomes]
rs9320299	0.84[ASN][1000 genomes]
rs9320304	0.84[ASN][1000 genomes]
rs9320305	0.84[ASN][1000 genomes]
rs9372216	0.84[ASN][1000 genomes]
rs9372222	0.87[ASN][1000 genomes]
rs9372225	0.82[AMR][1000 genomes]
rs9374092	0.82[ASN][1000 genomes]
rs9374095	0.82[ASN][1000 genomes]
rs9374097	0.82[ASN][1000 genomes]
rs9374099	0.82[ASN][1000 genomes]
rs9374106	0.89[EUR][1000 genomes]
rs9374108	0.84[ASN][1000 genomes]
rs9374113	0.92[ASN][1000 genomes]
rs9374114	0.92[ASN][1000 genomes]
rs9384713	0.82[ASN][1000 genomes]
rs9384715	0.84[ASN][1000 genomes]
rs9384716	0.84[ASN][1000 genomes]
rs9384720	0.92[ASN][1000 genomes]
rs9386807	0.89[EUR][1000 genomes]
rs9386810	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9386812	0.82[ASN][1000 genomes]
rs9386813	0.82[ASN][1000 genomes]
rs9386816	0.82[ASN][1000 genomes]
rs9386817	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386818	0.84[ASN][1000 genomes]
rs9386823	0.84[ASN][1000 genomes]
rs9386824	0.84[ASN][1000 genomes]
rs9386825	0.84[ASN][1000 genomes]
rs9386826	0.83[ASN][1000 genomes]
rs9386833	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386835	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9398204	0.81[ASN][1000 genomes]
rs9398205	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398206	0.84[ASN][1000 genomes]
rs9398214	0.91[AMR][1000 genomes]
rs9398215	0.91[AMR][1000 genomes]
rs9400286	0.89[EUR][1000 genomes]
rs9400291	0.82[ASN][1000 genomes]
rs9400294	0.82[ASN][1000 genomes]
rs9400295	0.82[ASN][1000 genomes]
rs9400299	0.89[EUR][1000 genomes]
rs9400301	0.84[ASN][1000 genomes]
rs9400310	0.92[ASN][1000 genomes]
rs9400312	0.92[ASN][1000 genomes]
rs9400313	0.92[ASN][1000 genomes]
rs9400315	0.92[ASN][1000 genomes]
rs9400316	0.92[ASN][1000 genomes]
rs942923	0.82[ASN][1000 genomes]
rs942924	0.82[ASN][1000 genomes]
rs9480969	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9480973	0.82[ASN][1000 genomes]
rs9480974	0.82[ASN][1000 genomes]
rs9480976	0.82[ASN][1000 genomes]
rs9480982	0.83[ASN][1000 genomes]
rs9480984	0.92[ASN][1000 genomes]
rs9480985	0.92[ASN][1000 genomes]
rs9480986	0.92[ASN][1000 genomes]
rs9480987	0.86[ASN][1000 genomes]
rs9480990	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480991	0.92[ASN][1000 genomes]
rs9487141	0.82[ASN][1000 genomes]
rs9487156	0.84[ASN][1000 genomes]
rs9487160	0.82[ASN][1000 genomes]
rs9487164	0.83[ASN][1000 genomes]
rs9487170	0.84[ASN][1000 genomes]
rs9487171	0.83[ASN][1000 genomes]
rs9487172	0.87[ASN][1000 genomes]
rs9487176	0.92[ASN][1000 genomes]
rs9487178	0.92[ASN][1000 genomes]
rs9487179	0.85[ASN][1000 genomes]
rs9487180	0.92[ASN][1000 genomes]
rs9487183	0.86[ASN][1000 genomes]
rs9487186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs971432	0.92[ASN][1000 genomes]
rs971433	0.92[ASN][1000 genomes]
rs9986423	0.92[ASN][1000 genomes]
rs9986507	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109978000-110010600	Weak transcription	Brain Germinal Matrix	brain
2	chr6:109980600-110011200	Weak transcription	Fetal Thymus	thymus
3	chr6:109989400-110011400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:109990000-110010600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:109991400-110007200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:109991400-110010600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:109992000-110011200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:109992400-110011400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:109998400-110010800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:110000400-110011400	Weak transcription	Left Ventricle	heart
11	chr6:110000600-110010800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:110001000-110008600	Weak transcription	Thymus	Thymus
13	chr6:110001000-110011400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:110001200-110011600	Weak transcription	Spleen	Spleen
15	chr6:110001400-110008200	Weak transcription	Primary T cells from cord blood	blood

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