Variant report

Variant	rs73535341
Chromosome Location	chr6:110034998-110034999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13437149	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17070874	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2076929	0.91[AMR][1000 genomes]
rs2295835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295836	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3823235	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6568587	0.82[AMR][1000 genomes]
rs6900091	0.91[AMR][1000 genomes]
rs6917383	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6925005	0.82[AMR][1000 genomes]
rs7356790	0.91[AMR][1000 genomes]
rs7740192	0.91[AMR][1000 genomes]
rs7742066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743159	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7749605	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7765916	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7767805	0.81[AMR][1000 genomes]
rs7775092	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs927127	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9372225	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9372226	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374117	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374121	0.85[ASN][1000 genomes]
rs9386833	0.91[AMR][1000 genomes]
rs9386835	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386842	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398215	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9480990	0.81[AMR][1000 genomes]
rs9487186	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9487193	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487203	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110057000	Weak transcription	Left Ventricle	heart
2	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
3	chr6:110013200-110057000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:110013200-110057000	Weak transcription	Aorta	Aorta
5	chr6:110013400-110038600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:110013600-110056000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:110013600-110056800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:110024200-110038800	Weak transcription	Thymus	Thymus
9	chr6:110024200-110056400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:110025000-110057000	Weak transcription	Fetal Thymus	thymus
11	chr6:110027000-110038200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:110027000-110040400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:110027000-110052400	Weak transcription	Liver	Liver
14	chr6:110027000-110056400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:110027600-110038600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:110027800-110038200	Weak transcription	Placenta	Placenta
17	chr6:110028000-110036800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:110028000-110038000	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:110028000-110044000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:110028000-110071200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:110028200-110036200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:110028200-110036200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:110028200-110036800	Weak transcription	Adipose Nuclei	Adipose
24	chr6:110028200-110037600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:110028200-110057200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:110028200-110080800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:110028400-110035000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:110029000-110036600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:110030000-110035400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:110033200-110041000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:110034200-110035000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:110034200-110035000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:110034200-110035000	Enhancers	HMEC	breast
34	chr6:110034200-110035200	Enhancers	Esophagus	oesophagus
35	chr6:110034200-110035200	Genic enhancers	Spleen	Spleen
36	chr6:110034200-110035400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:110034200-110035400	Enhancers	Pancreas	Pancrea
38	chr6:110034200-110035600	Enhancers	Gastric	stomach
39	chr6:110034200-110039400	Strong transcription	Primary T cells from cord blood	blood
40	chr6:110034400-110035000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:110034400-110035000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:110034400-110035200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:110034400-110035400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:110034400-110035400	Enhancers	Brain Germinal Matrix	brain
45	chr6:110034400-110041600	Weak transcription	Brain Substantia Nigra	brain
46	chr6:110034400-110042200	Weak transcription	NHLF	lung
47	chr6:110034400-110044400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:110034400-110060800	Weak transcription	Fetal Stomach	stomach
49	chr6:110034600-110035600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:110034600-110035600	Enhancers	Ovary	ovary

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