Variant report

Variant	rs7775092
Chromosome Location	chr6:110074412-110074413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13437149	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070874	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2295835	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2295836	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823235	0.80[EUR][1000 genomes]
rs73535341	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742066	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9372225	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372226	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374117	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374121	0.93[ASN][1000 genomes]
rs9386835	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386842	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9398214	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398215	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487193	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487203	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487213	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv5436	chr6:110052812-110097662	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
2	chr6:110028200-110080800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:110035000-110084000	Weak transcription	GM12878-XiMat	blood
4	chr6:110035200-110094200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:110035400-110083000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:110035600-110089000	Weak transcription	Spleen	Spleen
7	chr6:110036800-110115600	Weak transcription	Colonic Mucosa	Colon
8	chr6:110039000-110081000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:110041400-110081000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:110042200-110088800	Weak transcription	Fetal Intestine Small	intestine
11	chr6:110042400-110089000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:110044200-110115400	Weak transcription	Brain Angular Gyrus	brain
13	chr6:110047200-110084000	Weak transcription	Small Intestine	intestine
14	chr6:110048600-110089800	Weak transcription	Fetal Kidney	kidney
15	chr6:110050400-110078400	Weak transcription	Fetal Brain Male	brain
16	chr6:110057200-110089000	Weak transcription	Fetal Brain Female	brain
17	chr6:110057400-110089000	Weak transcription	Esophagus	oesophagus
18	chr6:110057600-110086200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:110058200-110087200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:110058200-110089000	Weak transcription	Lung	lung
21	chr6:110058400-110085000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:110058400-110089600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:110058800-110112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:110060000-110087800	Weak transcription	Fetal Thymus	thymus
26	chr6:110061200-110089200	Weak transcription	Pancreas	Pancrea
27	chr6:110062600-110089200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:110062800-110087400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:110062800-110088000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:110063000-110078000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:110065200-110084000	Weak transcription	Left Ventricle	heart
32	chr6:110065200-110089000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:110065200-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:110065400-110094200	Weak transcription	Brain Substantia Nigra	brain
35	chr6:110065600-110077800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:110065600-110080800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:110065600-110084000	Weak transcription	Placenta	Placenta
38	chr6:110065600-110087200	Weak transcription	HSMMtube	muscle
39	chr6:110065600-110087400	Weak transcription	Fetal Stomach	stomach
40	chr6:110065600-110089000	Weak transcription	Gastric	stomach
41	chr6:110065600-110089200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:110065800-110078000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:110065800-110078200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:110065800-110080800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:110065800-110081000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:110065800-110086200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr6:110065800-110086400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:110065800-110087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:110065800-110087200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:110065800-110088600	Weak transcription	Duodenum Mucosa	Duodenum

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