Variant report

Variant	rs13437149
Chromosome Location	chr6:110087617-110087618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10659	1.00[CEU][hapmap]
rs10872052	0.92[CHB][hapmap]
rs11153200	0.92[CHB][hapmap]
rs11968485	0.92[CHB][hapmap]
rs12215867	0.92[CHB][hapmap]
rs12524352	0.91[CHB][hapmap]
rs1321327	0.92[CHB][hapmap]
rs1406957	0.92[CHB][hapmap]
rs1474959	0.92[CHB][hapmap]
rs1570013	0.92[CHB][hapmap]
rs17070874	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17070970	1.00[CEU][hapmap]
rs17070972	1.00[CEU][hapmap]
rs17070984	1.00[CEU][hapmap]
rs2016207	0.92[CHB][hapmap]
rs2076929	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs2145144	0.92[CHB][hapmap]
rs2295835	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2295836	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823235	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs4512266	1.00[CEU][hapmap]
rs4523125	0.92[CHB][hapmap]
rs4946992	0.92[CHB][hapmap]
rs6568587	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs6568595	0.92[CHB][hapmap]
rs6917383	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs6924269	0.92[CHB][hapmap]
rs6925005	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs6933729	1.00[CEU][hapmap]
rs6941360	0.81[JPT][hapmap]
rs73535341	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7356790	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7450970	0.92[CHB][hapmap]
rs7453835	0.92[CHB][hapmap]
rs7742066	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7744512	1.00[CEU][hapmap]
rs7744981	0.92[CHB][hapmap]
rs7745469	0.92[CHB][hapmap]
rs7749605	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs7749910	0.92[CHB][hapmap]
rs7761008	0.92[CHB][hapmap]
rs7765916	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7767805	1.00[CEU][hapmap]
rs7775092	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829816	0.92[CHB][hapmap]
rs9320304	0.92[CHB][hapmap]
rs9372222	0.92[CHB][hapmap]
rs9372225	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372226	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374108	0.92[CHB][hapmap]
rs9374110	0.88[CHB][hapmap]
rs9374114	0.92[CHB][hapmap]
rs9374117	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9386818	0.92[CHB][hapmap]
rs9386823	0.91[CHB][hapmap]
rs9386824	0.92[CHB][hapmap]
rs9386826	0.89[CHB][hapmap]
rs9386835	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386842	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398214	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398215	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400310	0.92[CHB][hapmap]
rs9400312	0.91[CHB][hapmap]
rs9400313	0.83[CHB][hapmap]
rs9400316	0.92[CHB][hapmap]
rs9400320	0.81[JPT][hapmap]
rs9480984	0.92[CHB][hapmap]
rs9480991	0.92[CHB][hapmap]
rs9481003	0.81[JPT][hapmap]
rs9487171	0.92[CHB][hapmap]
rs9487172	0.92[CHB][hapmap]
rs9487175	0.92[CHB][hapmap]
rs9487176	0.92[CHB][hapmap]
rs9487180	0.92[CHB][hapmap]
rs9487193	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487203	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487213	0.90[AFR][1000 genomes]
rs971432	0.92[CHB][hapmap]
rs9986507	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv5436	chr6:110052812-110097662	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
2	chr6:110035200-110094200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:110035600-110089000	Weak transcription	Spleen	Spleen
4	chr6:110036800-110115600	Weak transcription	Colonic Mucosa	Colon
5	chr6:110042200-110088800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:110042400-110089000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:110044200-110115400	Weak transcription	Brain Angular Gyrus	brain
8	chr6:110048600-110089800	Weak transcription	Fetal Kidney	kidney
9	chr6:110057200-110089000	Weak transcription	Fetal Brain Female	brain
10	chr6:110057400-110089000	Weak transcription	Esophagus	oesophagus
11	chr6:110058200-110089000	Weak transcription	Lung	lung
12	chr6:110058400-110089600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:110058800-110112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:110060000-110087800	Weak transcription	Fetal Thymus	thymus
16	chr6:110061200-110089200	Weak transcription	Pancreas	Pancrea
17	chr6:110062600-110089200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:110062800-110088000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:110065200-110089000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:110065200-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:110065400-110094200	Weak transcription	Brain Substantia Nigra	brain
22	chr6:110065600-110089000	Weak transcription	Gastric	stomach
23	chr6:110065600-110089200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:110065800-110088600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:110065800-110089000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:110065800-110089000	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:110065800-110089000	Weak transcription	Thymus	Thymus
28	chr6:110065800-110107400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:110065800-110107400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:110067800-110089000	Weak transcription	Fetal Lung	lung
31	chr6:110069800-110089200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:110070200-110089000	Weak transcription	Aorta	Aorta
33	chr6:110072000-110089000	Weak transcription	Ovary	ovary
34	chr6:110076600-110089000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:110078200-110089000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:110078600-110088000	Weak transcription	NHDF-Ad	bronchial
37	chr6:110078800-110107400	Weak transcription	Fetal Brain Male	brain
38	chr6:110079600-110088600	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:110080800-110089000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:110081000-110090800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:110081200-110089000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:110081200-110094200	Weak transcription	Psoas Muscle	Psoas
43	chr6:110081200-110109600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:110081400-110089000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:110081600-110090200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:110081600-110092200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:110081600-110115000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:110081800-110089000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:110081800-110089000	Weak transcription	NHLF	lung
50	chr6:110081800-110089800	Strong transcription	Primary B cells from cord blood	blood

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