Variant report

Variant	rs17070972
Chromosome Location	chr6:110117122-110117123
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110114769..110118657-chr6:110122896..110125381,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10659	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13437149	1.00[CEU][hapmap]
rs17070874	1.00[CEU][hapmap]
rs17070970	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17070984	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2076929	1.00[CEU][hapmap]
rs2295835	1.00[CEU][hapmap]
rs2295836	1.00[CEU][hapmap]
rs34735897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823235	1.00[CEU][hapmap]
rs4130817	0.84[AFR][1000 genomes]
rs4512266	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58730628	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs59180278	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60456575	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6568587	1.00[CEU][hapmap]
rs6917383	1.00[CEU][hapmap]
rs6925005	1.00[CEU][hapmap]
rs6933729	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6935696	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73525129	0.84[AFR][1000 genomes]
rs7356790	1.00[CEU][hapmap]
rs73762801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765003	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765005	0.84[AFR][1000 genomes]
rs73765007	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765009	1.00[EUR][1000 genomes]
rs7742066	1.00[CEU][hapmap]
rs7744512	1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765916	1.00[CEU][hapmap]
rs7767805	1.00[CEU][hapmap]
rs9372226	1.00[CEU][hapmap]
rs9386835	1.00[CEU][hapmap]
rs9386842	1.00[CEU][hapmap]
rs9398214	1.00[CEU][hapmap]
rs9398215	1.00[CEU][hapmap]
rs9481003	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:110082200-110119800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:110090000-110121000	Weak transcription	Ovary	ovary
5	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
6	chr6:110094800-110117400	Weak transcription	Fetal Heart	heart
7	chr6:110105600-110127800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:110106800-110127000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:110108000-110140200	Weak transcription	Fetal Brain Male	brain
10	chr6:110108200-110117200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:110108200-110128000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:110108200-110131600	Weak transcription	Placenta	Placenta
13	chr6:110108200-110133200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:110108600-110117200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:110109600-110117200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:110110200-110121000	Weak transcription	Aorta	Aorta
17	chr6:110110200-110128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:110110400-110122400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:110110800-110137400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:110111800-110117200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:110112000-110121000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:110112800-110117400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:110112800-110124400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:110112800-110145400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:110113000-110117200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:110113000-110117200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:110113000-110117200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:110114400-110117600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:110114400-110117800	Enhancers	NH-A	brain
30	chr6:110114600-110117200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:110114600-110117400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:110114600-110126000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:110114600-110128200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:110114800-110121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:110115200-110117200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr6:110115200-110117800	Enhancers	GM12878-XiMat	blood
37	chr6:110115200-110126000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:110115200-110134800	Weak transcription	Liver	Liver
39	chr6:110115400-110117200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:110115400-110119000	Weak transcription	Fetal Brain Female	brain
41	chr6:110115400-110120400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:110115600-110119800	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr6:110115600-110120400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:110115600-110123400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:110115800-110117200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:110115800-110117200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:110115800-110117200	Weak transcription	Brain Angular Gyrus	brain
48	chr6:110115800-110117200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:110115800-110117200	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:110115800-110117400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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