Variant report

Variant	rs6924269
Chromosome Location	chr6:110008534-110008535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:110008028-110008894	MCF10A-Er-Src	breast:	n/a	n/a
2	YY1	chr6:110008477-110008956	SK-N-SH	brain:	n/a	n/a
3	JUN	chr6:110008427-110008753	K562	blood:	n/a	n/a
4	CEBPB	chr6:110008384-110008743	Hela-S3	cervix:	n/a	chr6:110008552-110008563
5	CEBPB	chr6:110008480-110008680	HepG2	liver:	n/a	chr6:110008552-110008563
6	CEBPB	chr6:110008365-110008934	IMR90	lung:	n/a	chr6:110008552-110008563
7	FOS	chr6:110008120-110009016	MCF10A-Er-Src	breast:	n/a	n/a
8	USF1	chr6:110008517-110008828	K562	blood:	n/a	n/a
9	CEBPB	chr6:110008257-110008925	HCT-116	colon:	n/a	chr6:110008552-110008563
10	USF1	chr6:110008332-110008937	HCT-116	colon:	n/a	n/a
11	EGR1	chr6:110008425-110008680	K562	blood:	n/a	n/a
12	EGR1	chr6:110008377-110008847	K562	blood:	n/a	n/a
13	FOS	chr6:110008374-110009025	HUVEC	blood vessel:	n/a	n/a
14	JUND	chr6:110008362-110008886	K562	blood:	n/a	chr6:110008540-110008551
15	FOS	chr6:110008045-110009046	MCF10A-Er-Src	breast:	n/a	n/a
16	MYC	chr6:110008090-110008995	MCF10A-Er-Src	breast:	n/a	n/a
17	CEBPB	chr6:110008251-110009063	HCT-116	colon:	n/a	chr6:110008552-110008563
18	USF1	chr6:110008498-110009022	SK-N-SH	brain:	n/a	n/a
19	STAT3	chr6:110008062-110008904	MCF10A-Er-Src	breast:	n/a	n/a
20	EGR1	chr6:110008405-110009047	HCT-116	colon:	n/a	n/a
21	POLR2A	chr6:110008182-110009064	MCF10A-Er-Src	breast:	n/a	n/a
22	CEBPB	chr6:110008413-110008730	K562	blood:	n/a	chr6:110008552-110008563
23	JUND	chr6:110008490-110008667	HepG2	liver:	n/a	chr6:110008540-110008551
24	MAX	chr6:110008174-110008818	Hela-S3	cervix:	n/a	n/a
25	USF2	chr6:110008521-110008929	Hela-S3	cervix:	n/a	chr6:110008754-110008765 chr6:110008729-110008740
26	ATF3	chr6:110008348-110008671	K562	blood:	n/a	n/a
27	POLR2A	chr6:110008351-110009000	U87	brain:	n/a	n/a
28	POLR2A	chr6:110008330-110008863	HL-60	blood:	n/a	n/a
29	ATF1	chr6:110008403-110008832	K562	blood:	n/a	n/a
30	CEBPB	chr6:110008348-110008719	K562	blood:	n/a	chr6:110008552-110008563
31	BHLHE40	chr6:110008452-110008919	K562	blood:	n/a	n/a
32	JUN	chr6:110008266-110009084	K562	blood:	n/a	n/a
33	FOS	chr6:110008089-110009010	MCF10A-Er-Src	breast:	n/a	n/a
34	MYC	chr6:110008452-110008846	NB4	blood:	n/a	n/a
35	POLR2A	chr6:110008180-110009071	MCF10A-Er-Src	breast:	n/a	n/a
36	NFIC	chr6:110008521-110009081	SK-N-SH	brain:	n/a	n/a
37	NFIC	chr6:110008516-110009147	SK-N-SH	brain:	n/a	n/a
38	CEBPB	chr6:110008450-110008602	K562	blood:	n/a	chr6:110008552-110008563
39	STAT3	chr6:110008087-110009028	MCF10A-Er-Src	breast:	n/a	n/a
40	EGR1	chr6:110008303-110009014	HCT-116	colon:	n/a	n/a
41	USF1	chr6:110008480-110008975	HCT-116	colon:	n/a	n/a
42	STAT3	chr6:110008069-110008888	MCF10A-Er-Src	breast:	n/a	n/a
43	MYC	chr6:110008148-110009009	MCF10A-Er-Src	breast:	n/a	n/a
44	FOS	chr6:110008015-110009041	MCF10A-Er-Src	breast:	n/a	n/a
45	MAX	chr6:110008317-110008925	NB4	blood:	n/a	n/a
46	TBL1XR1	chr6:110008408-110008711	K562	blood:	n/a	n/a
47	STAT3	chr6:110008371-110008902	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109982568..109985653-chr6:110007788..110010480,3	K562	blood:
2	chr6:110006952..110010658-chr6:110010983..110015603,5	K562	blood:
3	chr6:109983707..109985653-chr6:110007788..110010480,2	K562	blood:

Variant related genes	Relation type
FIG4	TF binding region
ENSG00000112367	Chromatin interaction
ENSG00000155085	Chromatin interaction

Extended variants
information (count: 255 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:250)

rs_ID	r²[population]
rs10457201	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872035	0.82[EUR][1000 genomes]
rs10872041	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872047	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10872051	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10872052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1096136	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1096138	0.82[EUR][1000 genomes]
rs1096139	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1096140	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1096142	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1102924	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11153193	0.90[EUR][1000 genomes]
rs11153194	0.85[EUR][1000 genomes]
rs11153195	0.83[EUR][1000 genomes]
rs11153200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11153201	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1115977	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11505167	0.82[ASN][1000 genomes]
rs11753828	0.81[CEU][hapmap]
rs11754263	0.81[CEU][hapmap]
rs11966009	0.89[EUR][1000 genomes]
rs11968485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12204769	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12207793	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12211805	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12211987	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12215867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12524352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12663674	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1321327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13437149	0.92[CHB][hapmap]
rs1358759	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1406957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1474959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1570011	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1570012	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1570013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1575108	0.87[EUR][1000 genomes]
rs1575109	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1590187	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070656	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17070874	0.83[CHB][hapmap]
rs17540056	0.82[CEU][hapmap]
rs1885425	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925921	0.81[CEU][hapmap]
rs1967725	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1969710	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1969711	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1985123	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1998812	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2016207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2064820	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076929	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2093097	0.85[EUR][1000 genomes]
rs2145144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208210	0.86[EUR][1000 genomes]
rs2295835	0.82[CHB][hapmap]
rs2295836	0.82[CHB][hapmap]
rs2357123	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2357125	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2357128	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2357130	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2884101	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3823235	0.83[CHB][hapmap]
rs4273727	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4454170	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4523125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4591898	0.88[EUR][1000 genomes]
rs4946986	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946987	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4946989	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946991	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4946992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946993	0.86[EUR][1000 genomes]
rs4946996	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4946997	0.81[EUR][1000 genomes]
rs4946998	0.81[EUR][1000 genomes]
rs4946999	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4947003	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4947004	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs4947006	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs4947009	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56125306	0.82[EUR][1000 genomes]
rs56264193	0.80[EUR][1000 genomes]
rs62435981	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62435982	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6568580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6568583	0.81[CEU][hapmap]
rs6568587	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6568590	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6568591	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs6568593	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6568594	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568596	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568598	0.81[EUR][1000 genomes]
rs6568600	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs6568602	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6568603	0.96[CEU][hapmap]
rs67715693	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6900091	0.89[ASN][1000 genomes]
rs6912368	0.81[CEU][hapmap]
rs6916239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6917300	0.81[CEU][hapmap]
rs6917383	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6917713	0.82[ASN][1000 genomes]
rs6917999	0.84[EUR][1000 genomes]
rs6918140	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921303	0.82[CEU][hapmap]
rs6922784	0.87[EUR][1000 genomes]
rs6925005	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6927075	0.82[ASN][1000 genomes]
rs6929823	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6931630	0.82[CEU][hapmap]
rs6932271	0.82[ASN][1000 genomes]
rs6938499	0.86[EUR][1000 genomes]
rs6942171	0.81[CEU][hapmap]
rs71541004	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs731879	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7356790	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7450970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7453835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7454678	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7454858	0.87[EUR][1000 genomes]
rs7740192	0.89[ASN][1000 genomes]
rs7742066	0.81[CHB][hapmap]
rs7743159	0.92[ASN][1000 genomes]
rs7744981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745406	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7745469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7749386	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7749605	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7749910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7751458	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7752445	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7753555	0.89[ASN][1000 genomes]
rs7754118	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7754606	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7761008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7764783	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7765265	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7765916	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7767805	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7768577	0.82[ASN][1000 genomes]
rs7775420	0.81[CEU][hapmap]
rs829813	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs829814	0.96[CEU][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs829815	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829817	0.83[EUR][1000 genomes]
rs829818	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs853544	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs911022	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs911023	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs9320294	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320295	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320296	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320299	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9320303	0.82[CEU][hapmap]
rs9320304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9320305	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9372216	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9372220	0.81[CEU][hapmap]
rs9372221	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9372222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9372226	0.82[CHB][hapmap]
rs9374092	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9374094	0.82[EUR][1000 genomes]
rs9374095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9374097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9374098	0.87[EUR][1000 genomes]
rs9374099	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9374108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9374113	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374121	0.81[CEU][hapmap];0.92[CHB][hapmap]
rs9384713	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384715	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9384716	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9384717	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs9384720	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386812	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9386813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9386816	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9386817	0.82[ASN][1000 genomes]
rs9386818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386820	0.85[EUR][1000 genomes]
rs9386823	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386825	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386826	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9386833	0.89[ASN][1000 genomes]
rs9386835	0.82[CHB][hapmap]
rs9386842	0.83[CHB][hapmap]
rs9398204	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9398206	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9398214	0.82[CHB][hapmap]
rs9398215	0.82[CHB][hapmap]
rs9400288	0.82[EUR][1000 genomes]
rs9400289	0.81[CEU][hapmap]
rs9400291	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400293	0.85[EUR][1000 genomes]
rs9400294	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400295	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400301	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9400307	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9400310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400313	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400314	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9400315	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs942923	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs942924	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480974	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480976	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480982	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9480984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9480985	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9480986	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9480987	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9480990	0.89[ASN][1000 genomes]
rs9480991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487141	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9487148	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9487152	0.86[EUR][1000 genomes]
rs9487153	0.85[EUR][1000 genomes]
rs9487156	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487160	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9487164	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9487168	0.82[EUR][1000 genomes]
rs9487169	0.86[EUR][1000 genomes]
rs9487170	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9487172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9487175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9487176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487178	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487179	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487183	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9487186	0.92[ASN][1000 genomes]
rs971432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs971433	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968792	0.81[EUR][1000 genomes]
rs9986423	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9986507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6924269	C6orf199	Cis_1M	lymphoblastoid	RTeQTL
rs6924269	SMPD2	cis	Whole Blood	GTEx

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109978000-110010600	Weak transcription	Brain Germinal Matrix	brain
2	chr6:109980600-110011200	Weak transcription	Fetal Thymus	thymus
3	chr6:109989400-110011400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:109990000-110010600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:109991400-110010600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:109992000-110011200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:109992400-110011400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:109998400-110010800	Weak transcription	Primary B cells from cord blood	blood
9	chr6:110000400-110011400	Weak transcription	Left Ventricle	heart
10	chr6:110000600-110010800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:110001000-110008600	Weak transcription	Thymus	Thymus
12	chr6:110001000-110011400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:110001200-110011600	Weak transcription	Spleen	Spleen
14	chr6:110006400-110010600	Weak transcription	Fetal Brain Female	brain
15	chr6:110007200-110008800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:110007200-110009000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:110007200-110010000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:110007200-110011000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:110007200-110011400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:110007400-110009800	Enhancers	HMEC	breast
21	chr6:110007600-110008600	Enhancers	Hela-S3	cervix
22	chr6:110007600-110009000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:110007600-110009200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:110007600-110009200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:110007600-110009200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:110007600-110009400	Enhancers	NHEK	skin
27	chr6:110007600-110009400	Enhancers	NHLF	lung
28	chr6:110007800-110008600	Enhancers	Brain Cingulate Gyrus	brain
29	chr6:110007800-110008800	Enhancers	Brain Anterior Caudate	brain
30	chr6:110007800-110008800	Enhancers	Brain Hippocampus Middle	brain
31	chr6:110007800-110009200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:110007800-110009400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:110007800-110009400	Enhancers	Osteobl	bone
34	chr6:110008000-110008600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr6:110008000-110009200	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr6:110008000-110009200	Enhancers	NHDF-Ad	bronchial
37	chr6:110008000-110010800	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:110008200-110008600	Enhancers	Brain Angular Gyrus	brain
39	chr6:110008200-110008600	Enhancers	HSMM	muscle
40	chr6:110008200-110009000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:110008200-110009200	Enhancers	HSMMtube	muscle
42	chr6:110008200-110009200	Enhancers	HUVEC	blood vessel
43	chr6:110008200-110009200	Enhancers	NH-A	brain
44	chr6:110008200-110010400	Strong transcription	Primary T cells from cord blood	blood
45	chr6:110008400-110009000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:110008400-110009000	Enhancers	Pancreas	Pancrea
47	chr6:110008400-110009200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:110008400-110011200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:110008400-110011200	Weak transcription	Psoas Muscle	Psoas

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