Variant report

Variant	rs6927075
Chromosome Location	chr6:109916932-109916933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109916901..109917812-chr6:110016606..110017379,4	MCF-7	breast:

Extended variants
information (count: 194 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs10080533	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10434873	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10457201	0.95[ASN][1000 genomes]
rs10872041	0.92[ASN][1000 genomes]
rs10872047	0.95[ASN][1000 genomes]
rs10872051	0.83[ASN][1000 genomes]
rs10872052	0.87[ASN][1000 genomes]
rs1096139	0.84[ASN][1000 genomes]
rs1096140	0.84[ASN][1000 genomes]
rs1096142	0.84[ASN][1000 genomes]
rs1102924	0.84[ASN][1000 genomes]
rs11153193	0.85[ASN][1000 genomes]
rs11153195	0.80[ASN][1000 genomes]
rs11153200	0.87[ASN][1000 genomes]
rs11153201	0.87[ASN][1000 genomes]
rs1115977	0.95[ASN][1000 genomes]
rs11505167	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966009	0.87[ASN][1000 genomes]
rs11968485	0.87[ASN][1000 genomes]
rs12204769	0.82[ASN][1000 genomes]
rs12211805	0.82[ASN][1000 genomes]
rs12215867	0.87[ASN][1000 genomes]
rs12524352	0.95[ASN][1000 genomes]
rs12663674	0.87[ASN][1000 genomes]
rs1303981	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321327	0.87[ASN][1000 genomes]
rs1358759	0.92[ASN][1000 genomes]
rs1406957	0.87[ASN][1000 genomes]
rs1474959	0.95[ASN][1000 genomes]
rs1570011	0.95[ASN][1000 genomes]
rs1570012	0.95[ASN][1000 genomes]
rs1570013	0.92[ASN][1000 genomes]
rs1575109	0.91[ASN][1000 genomes]
rs1590187	0.92[ASN][1000 genomes]
rs17070656	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1885425	0.82[ASN][1000 genomes]
rs1967725	0.95[ASN][1000 genomes]
rs1969710	0.90[ASN][1000 genomes]
rs1969711	0.91[ASN][1000 genomes]
rs1985123	0.92[ASN][1000 genomes]
rs1998812	0.92[ASN][1000 genomes]
rs2016207	0.87[ASN][1000 genomes]
rs2064820	0.92[ASN][1000 genomes]
rs2064821	0.81[ASN][1000 genomes]
rs2076929	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2145144	0.82[ASN][1000 genomes]
rs2357123	0.92[ASN][1000 genomes]
rs2357125	0.95[ASN][1000 genomes]
rs2357130	0.87[ASN][1000 genomes]
rs2884101	0.87[ASN][1000 genomes]
rs4454170	0.87[ASN][1000 genomes]
rs4523125	0.95[ASN][1000 genomes]
rs4591898	0.80[ASN][1000 genomes]
rs4946986	0.92[ASN][1000 genomes]
rs4946987	0.88[ASN][1000 genomes]
rs4946989	0.95[ASN][1000 genomes]
rs4946991	0.93[ASN][1000 genomes]
rs4946992	0.95[ASN][1000 genomes]
rs4946996	0.87[ASN][1000 genomes]
rs4946999	0.87[ASN][1000 genomes]
rs4947003	0.87[ASN][1000 genomes]
rs4947009	0.81[ASN][1000 genomes]
rs60640103	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568580	0.92[ASN][1000 genomes]
rs6568587	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568590	0.87[ASN][1000 genomes]
rs6568594	0.84[ASN][1000 genomes]
rs6568595	0.84[ASN][1000 genomes]
rs6568596	0.82[ASN][1000 genomes]
rs67715693	0.89[ASN][1000 genomes]
rs6900091	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6916239	0.91[ASN][1000 genomes]
rs6917383	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6917713	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917999	0.84[ASN][1000 genomes]
rs6918140	0.82[ASN][1000 genomes]
rs6920712	0.82[AFR][1000 genomes]
rs6924269	0.82[ASN][1000 genomes]
rs6925005	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929823	0.95[ASN][1000 genomes]
rs6932271	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938499	0.84[ASN][1000 genomes]
rs731879	0.87[ASN][1000 genomes]
rs7356790	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7450970	0.87[ASN][1000 genomes]
rs7453835	0.95[ASN][1000 genomes]
rs7454678	0.93[ASN][1000 genomes]
rs7740192	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743159	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7744981	0.87[ASN][1000 genomes]
rs7745469	0.87[ASN][1000 genomes]
rs7749386	0.95[ASN][1000 genomes]
rs7749605	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749910	0.87[ASN][1000 genomes]
rs7751458	0.87[ASN][1000 genomes]
rs7753555	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7754118	0.95[ASN][1000 genomes]
rs7754606	0.95[ASN][1000 genomes]
rs7761008	0.87[ASN][1000 genomes]
rs7764783	0.87[ASN][1000 genomes]
rs7765265	0.87[ASN][1000 genomes]
rs7765916	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7767805	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7768577	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829815	0.84[ASN][1000 genomes]
rs829816	0.84[ASN][1000 genomes]
rs829818	0.84[ASN][1000 genomes]
rs853544	0.84[ASN][1000 genomes]
rs927127	0.90[EUR][1000 genomes]
rs9320289	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320292	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320294	0.91[ASN][1000 genomes]
rs9320295	0.91[ASN][1000 genomes]
rs9320296	0.91[ASN][1000 genomes]
rs9320299	0.95[ASN][1000 genomes]
rs9320304	0.95[ASN][1000 genomes]
rs9320305	0.95[ASN][1000 genomes]
rs9372216	0.95[ASN][1000 genomes]
rs9372221	0.82[ASN][1000 genomes]
rs9372222	0.82[ASN][1000 genomes]
rs9374092	0.92[ASN][1000 genomes]
rs9374095	0.92[ASN][1000 genomes]
rs9374097	0.92[ASN][1000 genomes]
rs9374099	0.92[ASN][1000 genomes]
rs9374108	0.95[ASN][1000 genomes]
rs9374113	0.87[ASN][1000 genomes]
rs9374114	0.87[ASN][1000 genomes]
rs9384713	0.92[ASN][1000 genomes]
rs9384715	0.95[ASN][1000 genomes]
rs9384716	0.95[ASN][1000 genomes]
rs9384720	0.87[ASN][1000 genomes]
rs9386810	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386812	0.92[ASN][1000 genomes]
rs9386813	0.92[ASN][1000 genomes]
rs9386816	0.92[ASN][1000 genomes]
rs9386817	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386818	0.95[ASN][1000 genomes]
rs9386823	0.95[ASN][1000 genomes]
rs9386824	0.95[ASN][1000 genomes]
rs9386825	0.95[ASN][1000 genomes]
rs9386826	0.88[ASN][1000 genomes]
rs9386833	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398204	0.91[ASN][1000 genomes]
rs9398205	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398206	0.95[ASN][1000 genomes]
rs9400287	0.81[AFR][1000 genomes]
rs9400291	0.92[ASN][1000 genomes]
rs9400293	0.81[ASN][1000 genomes]
rs9400294	0.92[ASN][1000 genomes]
rs9400295	0.92[ASN][1000 genomes]
rs9400301	0.95[ASN][1000 genomes]
rs9400310	0.87[ASN][1000 genomes]
rs9400312	0.87[ASN][1000 genomes]
rs9400313	0.87[ASN][1000 genomes]
rs9400315	0.87[ASN][1000 genomes]
rs9400316	0.87[ASN][1000 genomes]
rs942923	0.92[ASN][1000 genomes]
rs942924	0.92[ASN][1000 genomes]
rs9480969	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480973	0.92[ASN][1000 genomes]
rs9480974	0.92[ASN][1000 genomes]
rs9480976	0.92[ASN][1000 genomes]
rs9480982	0.93[ASN][1000 genomes]
rs9480984	0.87[ASN][1000 genomes]
rs9480985	0.87[ASN][1000 genomes]
rs9480986	0.87[ASN][1000 genomes]
rs9480987	0.81[ASN][1000 genomes]
rs9480990	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9480991	0.87[ASN][1000 genomes]
rs9487141	0.92[ASN][1000 genomes]
rs9487148	0.88[ASN][1000 genomes]
rs9487156	0.95[ASN][1000 genomes]
rs9487160	0.92[ASN][1000 genomes]
rs9487164	0.93[ASN][1000 genomes]
rs9487170	0.95[ASN][1000 genomes]
rs9487171	0.93[ASN][1000 genomes]
rs9487172	0.92[ASN][1000 genomes]
rs9487175	0.86[ASN][1000 genomes]
rs9487176	0.87[ASN][1000 genomes]
rs9487178	0.87[ASN][1000 genomes]
rs9487179	0.80[ASN][1000 genomes]
rs9487180	0.87[ASN][1000 genomes]
rs9487183	0.81[ASN][1000 genomes]
rs9487186	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs971432	0.87[ASN][1000 genomes]
rs971433	0.87[ASN][1000 genomes]
rs9986423	0.87[ASN][1000 genomes]
rs9986507	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109879000-109917400	Weak transcription	Aorta	Aorta
2	chr6:109912400-109917400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links