Variant report

Variant	rs6920712
Chromosome Location	chr6:109812152-109812153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109804488..109806145-chr6:109811754..109813384,2	K562	blood:
2	chr6:109802819..109804460-chr6:109810914..109812722,2	K562	blood:

Variant related genes	Relation type
ENSG00000112365	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10080533	0.84[AFR][1000 genomes]
rs10457192	0.85[JPT][hapmap]
rs1046943	0.95[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.95[MKK][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs1054607	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11251	0.82[JPT][hapmap]
rs11754455	0.80[JPT][hapmap]
rs1303981	0.84[AFR][1000 genomes]
rs13201430	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1321207	0.87[LWK][hapmap]
rs1322815	0.86[GIH][hapmap]
rs1406955	0.82[CEU][hapmap]
rs1476387	0.82[JPT][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap]
rs17070591	0.90[YRI][hapmap]
rs17070656	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs2076929	0.94[YRI][hapmap]
rs2236084	0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];0.95[MKK][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs2277113	0.82[JPT][hapmap];0.90[YRI][hapmap]
rs35146243	0.92[ASN][1000 genomes]
rs3734652	0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];0.95[MKK][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs3757235	0.85[YRI][hapmap]
rs3778474	0.82[JPT][hapmap]
rs3778478	0.92[ASN][1000 genomes]
rs3799842	0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];0.95[MKK][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs60640103	0.89[AFR][1000 genomes]
rs6568587	0.95[YRI][hapmap]
rs6906216	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6911838	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs6917383	0.95[YRI][hapmap]
rs6917713	0.84[AFR][1000 genomes]
rs6920372	0.85[YRI][hapmap]
rs6925005	0.92[ASW][hapmap];0.93[LWK][hapmap];0.95[YRI][hapmap]
rs6926096	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6927075	0.82[AFR][1000 genomes]
rs6939548	0.92[ASN][1000 genomes]
rs730089	0.85[YRI][hapmap]
rs7356790	0.92[ASW][hapmap];0.93[LWK][hapmap];0.95[YRI][hapmap]
rs736830	0.85[YRI][hapmap]
rs7748669	0.82[JPT][hapmap]
rs7754650	0.82[JPT][hapmap]
rs7757895	0.87[GIH][hapmap];0.83[TSI][hapmap]
rs7765916	0.95[YRI][hapmap]
rs7767805	0.85[ASW][hapmap]
rs7768577	0.84[AFR][1000 genomes]
rs910730	0.84[MKK][hapmap];0.85[YRI][hapmap]
rs9320289	0.89[AFR][1000 genomes]
rs9320292	0.89[AFR][1000 genomes]
rs9372223	0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9374111	0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9384712	0.83[CEU][hapmap]
rs9384719	0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9386810	0.84[AFR][1000 genomes]
rs9386817	0.82[AFR][1000 genomes]
rs9386822	0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9386828	0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9386829	0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9398205	0.83[AFR][1000 genomes]
rs9398210	0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9400284	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400285	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9400287	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9480947	0.85[YRI][hapmap]
rs9480956	0.94[YRI][hapmap]
rs9480969	0.84[AFR][1000 genomes]
rs9487103	0.86[YRI][hapmap]
rs9791241	0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.95[MKK][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6920712	RFPL4B	cis	parietal	SCAN
rs6920712	FLJ25791	cis	multi-tissue	Pritchard

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109804400-109814200	Weak transcription	Gastric	stomach
2	chr6:109805000-109817000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:109805600-109812400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:109806200-109812200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:109806800-109812200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:109807400-109812800	Weak transcription	Placenta	Placenta
7	chr6:109809600-109812600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:109811200-109812400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:109811400-109813600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:109811600-109812400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:109811600-109813200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr6:109811600-109813400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:109811600-109813400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:109811600-109813400	Enhancers	Primary T cells from cord blood	blood
15	chr6:109811600-109813600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:109811600-109813600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:109811600-109813600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:109811600-109813600	Enhancers	Fetal Thymus	thymus
19	chr6:109811600-109815000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:109811800-109812400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:109811800-109813200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:109811800-109813400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:109811800-109813400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:109811800-109813400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:109811800-109813600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr6:109812000-109812200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:109812000-109812400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:109812000-109812400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:109812000-109812600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:109812000-109812800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:109812000-109813000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:109812000-109813400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:109812000-109813400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr6:109812000-109813400	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr6:109812000-109813400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr6:109812000-109813400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr6:109812000-109813400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:109812000-109813400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr6:109812000-109813400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr6:109812000-109813400	Enhancers	Thymus	Thymus
41	chr6:109812000-109813400	Flanking Active TSS	Dnd41	blood
42	chr6:109812000-109813400	Enhancers	K562	blood
43	chr6:109812000-109813600	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:109812000-109813600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:109812000-109813600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:109812000-109816800	Enhancers	HUES48 Cell Line	embryonic stem cell

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