Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:109843965..109846639-chr6:109847963..109850929,3	K562	blood:
2	chr6:109844069..109846460-chr6:110011087..110013839,3	MCF-7	breast:
3	chr6:109837056..109838849-chr6:109842605..109844539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155085	Chromatin interaction
ENSG00000112367	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17070656	0.80[YRI][hapmap]
rs2295835	0.93[LWK][hapmap];0.85[MKK][hapmap]
rs3757227	1.00[EUR][1000 genomes]
rs3757233	1.00[EUR][1000 genomes]
rs3778473	1.00[EUR][1000 genomes]
rs3799842	0.84[LWK][hapmap]
rs57456332	1.00[EUR][1000 genomes]
rs58026913	1.00[EUR][1000 genomes]
rs59233903	1.00[EUR][1000 genomes]
rs6568587	0.80[YRI][hapmap]
rs6904271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6920712	0.87[LWK][hapmap]
rs6925005	0.93[LWK][hapmap];0.87[MKK][hapmap];0.80[YRI][hapmap]
rs7356790	0.93[LWK][hapmap];0.85[MKK][hapmap];0.80[YRI][hapmap]
rs7753224	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770646	1.00[EUR][1000 genomes]
rs927128	0.87[ASW][hapmap]
rs9386835	0.93[LWK][hapmap];0.85[MKK][hapmap]
rs9398214	0.90[LWK][hapmap]
rs9398215	0.83[ASW][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap]
rs9400278	1.00[EUR][1000 genomes]
rs9487128	0.81[ASW][hapmap]
rs9487133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109835400-109851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:109835600-109844400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:109838600-109861400	Weak transcription	Thymus	Thymus
4	chr6:109839000-109844600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:109839000-109848200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:109842800-109845400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:109843400-109844400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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