Variant report

Variant	rs6904271
Chromosome Location	chr6:109716206-109716207
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109701635..109705830-chr6:109715180..109719953,6	MCF-7	breast:
2	chr6:109706394..109711073-chr6:109716163..109719392,4	K562	blood:
3	chr6:109415474..109417008-chr6:109713860..109716302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000080546	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11963133	0.86[ASN][1000 genomes]
rs1321207	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1322814	1.00[CEU][hapmap]
rs2232448	1.00[CEU][hapmap]
rs28575685	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757227	1.00[ASN][1000 genomes]
rs3757233	1.00[ASN][1000 genomes]
rs3778473	1.00[ASN][1000 genomes]
rs57456332	0.94[ASN][1000 genomes]
rs57919077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58026913	1.00[ASN][1000 genomes]
rs58535912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59233903	0.94[ASN][1000 genomes]
rs6907946	1.00[CEU][hapmap]
rs6922897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9400278	1.00[ASN][1000 genomes]
rs9487067	1.00[CEU][hapmap]
rs9487072	1.00[CEU][hapmap]
rs9487091	1.00[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6904271	CD164	cis	lymphoblastoid	seeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706200-109717200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:109706200-109717800	Weak transcription	Thymus	Thymus
4	chr6:109706400-109718400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:109706600-109717400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:109706800-109718600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
9	chr6:109711800-109725000	Weak transcription	Brain Anterior Caudate	brain
10	chr6:109712800-109716400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
12	chr6:109715200-109717200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:109715200-109721600	Weak transcription	K562	blood
14	chr6:109715400-109716600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:109715400-109717200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:109715400-109730400	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:109716000-109717000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:109716000-109717200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:109716200-109723600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links