Variant report

Variant	rs58535912
Chromosome Location	chr6:109711476-109711477
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109710996..109712933-chr6:109713290..109714925,2	MCF-7	breast:
2	chr6:109701817..109708859-chr6:109709273..109715844,12	K562	blood:
3	chr6:109711182..109714084-chr6:109716397..109718567,2	K562	blood:
4	chr6:109703167..109707934-chr6:109708161..109712915,9	MCF-7	breast:
5	chr6:109618104..109620663-chr6:109710406..109712166,2	MCF-7	breast:
6	chr6:109556764..109558719-chr6:109710608..109712276,2	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000243587	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11963133	0.86[ASN][1000 genomes]
rs28575685	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757227	1.00[ASN][1000 genomes]
rs3757233	1.00[ASN][1000 genomes]
rs3778473	1.00[ASN][1000 genomes]
rs57456332	0.94[ASN][1000 genomes]
rs57919077	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58026913	1.00[ASN][1000 genomes]
rs59233903	0.94[ASN][1000 genomes]
rs6904271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922897	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400278	1.00[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706000-109711600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:109706200-109711600	Weak transcription	Fetal Lung	lung
4	chr6:109706200-109711800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:109706200-109717200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:109706200-109717800	Weak transcription	Thymus	Thymus
7	chr6:109706400-109715000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:109706400-109718400	Weak transcription	Primary B cells from cord blood	blood
9	chr6:109706600-109711600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:109706600-109711600	Weak transcription	Fetal Stomach	stomach
11	chr6:109706600-109714800	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:109706600-109717400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:109706800-109711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:109706800-109711600	Weak transcription	Pancreas	Pancrea
16	chr6:109706800-109711600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:109706800-109712600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:109706800-109715600	Weak transcription	Gastric	stomach
19	chr6:109706800-109718600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:109707000-109711600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:109707000-109712000	Weak transcription	Hela-S3	cervix
22	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
23	chr6:109709800-109714800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:109710200-109713400	Enhancers	Fetal Intestine Large	intestine
25	chr6:109710200-109714800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:109710600-109711600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:109710800-109711600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:109710800-109711600	Enhancers	Aorta	Aorta
29	chr6:109710800-109711800	Enhancers	Left Ventricle	heart
30	chr6:109710800-109712000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:109710800-109712000	Enhancers	Stomach Mucosa	stomach
32	chr6:109710800-109712800	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:109710800-109712800	Enhancers	Adipose Nuclei	Adipose
34	chr6:109710800-109712800	Enhancers	Placenta	Placenta
35	chr6:109710800-109713000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:109710800-109713000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:109710800-109713000	Enhancers	NHEK	skin
38	chr6:109710800-109713200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:109711000-109711600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:109711000-109711800	Enhancers	Primary T cells from cord blood	blood
41	chr6:109711000-109711800	Enhancers	Brain Anterior Caudate	brain
42	chr6:109711000-109711800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:109711000-109711800	Weak transcription	Osteobl	bone
44	chr6:109711000-109712000	Enhancers	Psoas Muscle	Psoas
45	chr6:109711000-109712800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:109711000-109713600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:109711200-109712800	Enhancers	Fetal Muscle Leg	muscle
48	chr6:109711200-109713000	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr6:109711400-109711800	Enhancers	Right Atrium	heart
50	chr6:109711400-109711800	Enhancers	Monocytes-CD14+_RO01746	blood

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