Variant report

Variant	rs57919077
Chromosome Location	chr6:109727026-109727027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11963133	0.86[ASN][1000 genomes]
rs28575685	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757227	1.00[ASN][1000 genomes]
rs3757233	1.00[ASN][1000 genomes]
rs3778473	1.00[ASN][1000 genomes]
rs57456332	0.94[ASN][1000 genomes]
rs58026913	1.00[ASN][1000 genomes]
rs58535912	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59233903	0.94[ASN][1000 genomes]
rs6904271	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922897	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762717	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400278	1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
5	chr6:109715400-109730400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
7	chr6:109723400-109728000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:109724400-109727200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:109724400-109750400	Weak transcription	Ovary	ovary
10	chr6:109725000-109736600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:109725600-109731800	Weak transcription	NHEK	skin
12	chr6:109725800-109732000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:109725800-109760800	Weak transcription	Brain Anterior Caudate	brain
14	chr6:109726600-109727800	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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