Variant report

Variant	rs2232448
Chromosome Location	chr6:109787596-109787597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr6:109787595-109787619	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:109787577-109787625	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109787055..109789260-chr6:109802525..109804653,2	K562	blood:
2	chr6:109775385..109780026-chr6:109787394..109791434,6	K562	blood:

Variant related genes	Relation type
MICAL1	TF binding region
ENSG00000135596	Chromatin interaction
ENSG00000112365	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1322814	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1925921	0.95[MKK][hapmap];0.83[YRI][hapmap]
rs28571794	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655743	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34369365	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4947004	0.90[YRI][hapmap]
rs4947006	0.83[YRI][hapmap]
rs56166063	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56227394	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57767615	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60129681	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61303854	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61426096	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6568583	0.95[MKK][hapmap];0.83[YRI][hapmap]
rs6904271	1.00[CEU][hapmap]
rs6907946	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6912368	0.81[YRI][hapmap]
rs6921167	1.00[TSI][hapmap]
rs6921303	0.83[YRI][hapmap]
rs6936036	1.00[EUR][1000 genomes]
rs73762703	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762704	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762708	1.00[EUR][1000 genomes]
rs73762709	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762713	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762715	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762724	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762751	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762754	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762755	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764669	1.00[TSI][hapmap]
rs7775420	0.83[YRI][hapmap]
rs911022	0.95[MKK][hapmap];0.83[YRI][hapmap]
rs911023	0.83[YRI][hapmap]
rs9372220	0.91[YRI][hapmap]
rs9480932	1.00[EUR][1000 genomes]
rs9487067	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9487072	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9487075	1.00[EUR][1000 genomes]
rs9487091	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109778400-109791400	Weak transcription	Colonic Mucosa	Colon
2	chr6:109778800-109798800	Weak transcription	Small Intestine	intestine
3	chr6:109780600-109800400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:109781400-109802200	Strong transcription	HSMM	muscle
5	chr6:109782000-109798800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:109782000-109799000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:109782200-109788000	Strong transcription	Primary B cells from cord blood	blood
8	chr6:109782200-109792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:109782400-109789000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:109782400-109790600	Strong transcription	Fetal Thymus	thymus
11	chr6:109782400-109797600	Strong transcription	Dnd41	blood
12	chr6:109782400-109797800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:109782400-109798000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:109782400-109798200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:109782400-109798800	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr6:109782400-109798800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:109782400-109798800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:109782400-109798800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:109782400-109799000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:109782400-109799000	Strong transcription	Placenta	Placenta
21	chr6:109782400-109799200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr6:109782400-109799800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:109782400-109799800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr6:109782400-109800000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:109782400-109803000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:109782600-109789200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:109782600-109797800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:109782600-109799600	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:109782600-109800000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:109782800-109792600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr6:109783000-109788200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:109783000-109789400	Strong transcription	NHDF-Ad	bronchial
33	chr6:109783000-109797800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:109783000-109798000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:109783000-109798200	Strong transcription	Adipose Nuclei	Adipose
36	chr6:109783200-109799800	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:109783600-109799000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:109783800-109789000	Weak transcription	HSMMtube	muscle
39	chr6:109785000-109788200	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr6:109785000-109788800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:109785000-109794000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:109785200-109794800	Strong transcription	HMEC	breast
43	chr6:109785200-109796800	Strong transcription	Liver	Liver
44	chr6:109785400-109788200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:109785600-109788000	Strong transcription	Fetal Brain Female	brain
46	chr6:109785600-109788200	Strong transcription	Hela-S3	cervix
47	chr6:109785600-109789800	Strong transcription	NHLF	lung
48	chr6:109785600-109797800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:109785600-109798200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:109785600-109799200	Strong transcription	Primary hematopoietic stem cells	blood

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