Variant report

Variant	rs73762754
Chromosome Location	chr6:109781013-109781014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:109780994-109781032	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109779538..109782087-chr6:109794538..109796974,3	K562	blood:
2	chr6:109779059..109781769-chr6:109783298..109786186,2	MCF-7	breast:
3	chr6:109704063..109706352-chr6:109779634..109782625,2	K562	blood:

Variant related genes	Relation type
MICAL1	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1322814	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2232448	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28571794	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655743	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34369365	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56166063	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56227394	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57767615	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60129681	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61303854	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61426096	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907946	1.00[EUR][1000 genomes]
rs6936036	1.00[EUR][1000 genomes]
rs73762703	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762704	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762708	1.00[EUR][1000 genomes]
rs73762709	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762713	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762715	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762724	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762751	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762755	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480932	1.00[EUR][1000 genomes]
rs9487067	1.00[EUR][1000 genomes]
rs9487072	1.00[EUR][1000 genomes]
rs9487075	1.00[EUR][1000 genomes]
rs9487091	1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109777600-109782000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:109777600-109783200	Weak transcription	Hela-S3	cervix
3	chr6:109777800-109781600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:109777800-109782400	Weak transcription	Dnd41	blood
5	chr6:109777800-109786800	Weak transcription	Gastric	stomach
6	chr6:109777800-109786800	Weak transcription	Ovary	ovary
7	chr6:109778000-109783000	Weak transcription	HMEC	breast
8	chr6:109778000-109783000	Weak transcription	Osteobl	bone
9	chr6:109778000-109783200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:109778000-109786800	Weak transcription	Pancreas	Pancrea
11	chr6:109778000-109786800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:109778200-109781800	Enhancers	Primary B cells from cord blood	blood
13	chr6:109778200-109782000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:109778200-109782400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:109778200-109782400	Weak transcription	Fetal Kidney	kidney
16	chr6:109778200-109782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:109778200-109783200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:109778200-109784200	Weak transcription	Fetal Stomach	stomach
19	chr6:109778200-109785000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:109778200-109785600	Weak transcription	Fetal Brain Female	brain
21	chr6:109778200-109786600	Weak transcription	Fetal Heart	heart
22	chr6:109778200-109786800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:109778200-109786800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:109778200-109786800	Weak transcription	Fetal Brain Male	brain
25	chr6:109778200-109787000	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:109778400-109781200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:109778400-109781200	Enhancers	Stomach Mucosa	stomach
28	chr6:109778400-109782400	Weak transcription	HUVEC	blood vessel
29	chr6:109778400-109783000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:109778400-109783000	Weak transcription	HepG2	liver
31	chr6:109778400-109783200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:109778400-109786800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:109778400-109787000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:109778400-109791400	Weak transcription	Colonic Mucosa	Colon
35	chr6:109778600-109782000	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:109778600-109782200	Enhancers	Fetal Intestine Large	intestine
37	chr6:109778600-109782400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:109778600-109782400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:109778600-109782400	Weak transcription	Liver	Liver
40	chr6:109778600-109782600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:109778600-109782600	Weak transcription	A549	lung
42	chr6:109778600-109782600	Weak transcription	NH-A	brain
43	chr6:109778800-109782600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr6:109778800-109783000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:109778800-109785600	Weak transcription	Brain Angular Gyrus	brain
46	chr6:109778800-109786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:109778800-109798800	Weak transcription	Small Intestine	intestine
48	chr6:109779000-109782000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:109779000-109782400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:109779000-109782600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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