Variant report

Variant	rs73762713
Chromosome Location	chr6:109701479-109701480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:109701298-109701799	IMR90	lung:	n/a	n/a
2	POLR2A	chr6:109701353-109701681	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:109685661-109704818	K562	blood:	n/a	n/a
4	TBL1XR1	chr6:109700742-109703004	K562	blood:	n/a	n/a
5	CHD1	chr6:109700488-109705195	IMR90	lung:	n/a	n/a
6	STAT3	chr6:109701314-109702041	MCF10A-Er-Src	breast:	n/a	chr6:109701755-109701767 chr6:109701963-109701971
7	GATA3	chr6:109700688-109701531	SK-N-SH	brain:	n/a	n/a
8	MXI1	chr6:109700825-109705301	SK-N-SH	brain:	n/a	chr6:109704028-109704037 chr6:109704235-109704244 chr6:109704237-109704246 chr6:109703696-109703705
9	MXI1	chr6:109700978-109705291	IMR90	lung:	n/a	chr6:109704028-109704037 chr6:109704235-109704244 chr6:109704237-109704246 chr6:109703696-109703705

No.	Distal block	Cell Line	Cell type
1	chr6:109662626..109665384-chr6:109701229..109703998,3	MCF-7	breast:
2	chr6:109414172..109420012-chr6:109700263..109705604,12	MCF-7	breast:
3	chr6:109699708..109703613-chr6:109762807..109765058,4	K562	blood:
4	chr6:109414834..109419474-chr6:109701430..109708028,12	K562	blood:
5	chr6:109485631..109488192-chr6:109700352..109702464,2	K562	blood:
6	chr6:109414590..109417855-chr6:109700035..109707147,9	K562	blood:
7	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:

Variant related genes	Relation type
ENSG00000260273	TF binding region
ENSG00000201023	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000243587	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000183137	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1322814	1.00[EUR][1000 genomes]
rs2232448	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28571794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34369365	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56166063	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56227394	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57767615	1.00[EUR][1000 genomes]
rs60129681	1.00[EUR][1000 genomes]
rs61303854	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61426096	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907946	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6936036	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762703	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762708	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762709	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762715	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762724	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762751	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762754	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762755	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766319	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480932	1.00[EUR][1000 genomes]
rs9487067	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487072	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487075	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487091	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109684000-109702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:109684400-109702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:109690600-109701800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:109693400-109702600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:109694400-109701800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:109696800-109702400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:109697800-109702400	Weak transcription	Esophagus	oesophagus
8	chr6:109697800-109702800	Weak transcription	Spleen	Spleen
9	chr6:109698200-109701600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
10	chr6:109698400-109702400	Weak transcription	Lung	lung
11	chr6:109699400-109702400	Weak transcription	Gastric	stomach
12	chr6:109699400-109702600	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr6:109699600-109702400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:109699600-109702400	Weak transcription	Pancreas	Pancrea
15	chr6:109699800-109702400	Transcr. at gene 5' and 3'	K562	blood
16	chr6:109700200-109701600	Flanking Active TSS	Thymus	Thymus
17	chr6:109700200-109701600	Transcr. at gene 5' and 3'	Dnd41	blood
18	chr6:109700200-109701800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr6:109700200-109701800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr6:109700200-109702000	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr6:109700200-109702400	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr6:109700200-109705600	Active TSS	Stomach Smooth Muscle	stomach
23	chr6:109700400-109701600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr6:109700400-109701600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:109700400-109701800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr6:109700400-109702000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:109700400-109702200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr6:109700400-109702200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:109700400-109705200	Active TSS	Right Ventricle	heart
30	chr6:109700600-109701600	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:109700600-109701600	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr6:109700600-109701600	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr6:109700600-109701600	Flanking Active TSS	HMEC	breast
34	chr6:109700600-109701800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr6:109700600-109701800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:109700600-109702000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:109700600-109702000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr6:109700600-109702000	Flanking Active TSS	Liver	Liver
39	chr6:109700600-109702000	Flanking Active TSS	NH-A	brain
40	chr6:109700600-109702200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:109700600-109702200	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr6:109700600-109703000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:109700600-109703000	Active TSS	Right Atrium	heart
44	chr6:109700600-109704800	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr6:109700600-109704800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:109700600-109704800	Active TSS	Fetal Intestine Small	intestine
47	chr6:109700600-109704800	Active TSS	Fetal Muscle Leg	muscle
48	chr6:109700600-109704800	Active TSS	GM12878-XiMat	blood
49	chr6:109700600-109705000	Active TSS	Left Ventricle	heart
50	chr6:109700600-109705800	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links