Variant report

Variant	rs61426096
Chromosome Location	chr6:109654732-109654733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109654193..109659063-chr6:109701671..109705275,8	MCF-7	breast:
2	chr6:109654230..109656152-chr6:109690482..109693249,2	MCF-7	breast:
3	chr6:109652681..109655937-chr6:109701274..109703936,3	MCF-7	breast:
4	chr6:109654487..109657351-chr6:109665508..109668370,2	K562	blood:
5	chr6:109652928..109655072-chr6:109655937..109657890,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1322814	1.00[EUR][1000 genomes]
rs2232448	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28571794	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655743	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34369365	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56166063	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56227394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57767615	1.00[EUR][1000 genomes]
rs60129681	1.00[EUR][1000 genomes]
rs61303854	1.00[EUR][1000 genomes]
rs6907946	1.00[EUR][1000 genomes]
rs6936036	1.00[EUR][1000 genomes]
rs73762703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762704	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762708	1.00[EUR][1000 genomes]
rs73762709	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762713	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762715	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762724	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762751	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762754	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762755	1.00[EUR][1000 genomes]
rs73766319	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480932	1.00[EUR][1000 genomes]
rs9487067	1.00[EUR][1000 genomes]
rs9487072	1.00[EUR][1000 genomes]
rs9487075	1.00[EUR][1000 genomes]
rs9487091	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109644800-109657400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
4	chr6:109653000-109655000	Enhancers	Fetal Intestine Large	intestine
5	chr6:109653000-109655000	Enhancers	Fetal Intestine Small	intestine
6	chr6:109653000-109655000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr6:109653400-109658800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:109653800-109656400	Weak transcription	Colonic Mucosa	Colon
9	chr6:109654000-109657400	Weak transcription	Pancreas	Pancrea
10	chr6:109654000-109657600	Weak transcription	Adipose Nuclei	Adipose
11	chr6:109654000-109669400	Weak transcription	Small Intestine	intestine
12	chr6:109654200-109657000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:109654200-109657400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:109654200-109671000	Weak transcription	Spleen	Spleen
15	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:109654400-109656600	Weak transcription	Gastric	stomach
18	chr6:109654400-109657400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:109654400-109657400	Weak transcription	Placenta	Placenta
20	chr6:109654400-109657400	Weak transcription	Right Ventricle	heart
21	chr6:109654400-109657400	Weak transcription	Hela-S3	cervix
22	chr6:109654400-109657600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:109654400-109657600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:109654400-109657800	Weak transcription	K562	blood
25	chr6:109654400-109660600	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:109654400-109668800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:109654600-109655800	Weak transcription	Stomach Mucosa	stomach
28	chr6:109654600-109657400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links