Variant report

Variant	rs56166063
Chromosome Location	chr6:109653419-109653420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109649495..109651298-chr6:109651628..109654623,3	K562	blood:
2	chr6:109651102..109653530-chr6:109656449..109659654,3	MCF-7	breast:
3	chr6:109652681..109655937-chr6:109701274..109703936,3	MCF-7	breast:
4	chr6:109652928..109655072-chr6:109655937..109657890,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1322814	1.00[EUR][1000 genomes]
rs2232448	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28571794	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655743	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34369365	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56227394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57767615	1.00[EUR][1000 genomes]
rs60129681	1.00[EUR][1000 genomes]
rs61303854	1.00[EUR][1000 genomes]
rs61426096	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907946	1.00[EUR][1000 genomes]
rs6936036	1.00[EUR][1000 genomes]
rs73762703	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762704	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762708	1.00[EUR][1000 genomes]
rs73762709	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762713	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762715	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762724	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762751	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762754	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762755	1.00[EUR][1000 genomes]
rs73766319	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480932	1.00[EUR][1000 genomes]
rs9487067	1.00[EUR][1000 genomes]
rs9487072	1.00[EUR][1000 genomes]
rs9487075	1.00[EUR][1000 genomes]
rs9487091	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:109641000-109653600	Weak transcription	Small Intestine	intestine
3	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:109644800-109657400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:109645400-109653600	Weak transcription	Spleen	Spleen
6	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
7	chr6:109649200-109654000	Weak transcription	K562	blood
8	chr6:109649600-109653800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:109650200-109653600	Weak transcription	HepG2	liver
10	chr6:109650200-109653800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:109651600-109653600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:109651600-109654600	Enhancers	Stomach Mucosa	stomach
13	chr6:109651800-109653600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:109651800-109653800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:109652000-109653600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:109653000-109655000	Enhancers	Fetal Intestine Large	intestine
17	chr6:109653000-109655000	Enhancers	Fetal Intestine Small	intestine
18	chr6:109653000-109655000	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:109653200-109653800	Weak transcription	Gastric	stomach
20	chr6:109653400-109653800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:109653400-109653800	Enhancers	Colonic Mucosa	Colon
22	chr6:109653400-109654400	Enhancers	Duodenum Mucosa	Duodenum
23	chr6:109653400-109654400	Active TSS	Rectal Smooth Muscle	rectum
24	chr6:109653400-109654400	Enhancers	Right Ventricle	heart
25	chr6:109653400-109658800	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links