Variant report

Variant	rs9480932
Chromosome Location	chr6:109665483-109665484
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109665458..109673633-chr6:109699710..109704931,12	MCF-7	breast:
2	chr6:109656306..109660874-chr6:109662231..109666521,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1322814	1.00[EUR][1000 genomes]
rs2232448	1.00[EUR][1000 genomes]
rs28571794	1.00[EUR][1000 genomes]
rs28575685	0.89[AFR][1000 genomes]
rs28655743	1.00[EUR][1000 genomes]
rs34369365	1.00[EUR][1000 genomes]
rs56166063	1.00[EUR][1000 genomes]
rs56227394	1.00[EUR][1000 genomes]
rs57767615	1.00[EUR][1000 genomes]
rs60129681	1.00[EUR][1000 genomes]
rs61303854	1.00[EUR][1000 genomes]
rs61426096	1.00[EUR][1000 genomes]
rs6907946	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6936036	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762703	1.00[EUR][1000 genomes]
rs73762704	1.00[EUR][1000 genomes]
rs73762708	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762709	1.00[EUR][1000 genomes]
rs73762713	1.00[EUR][1000 genomes]
rs73762715	1.00[EUR][1000 genomes]
rs73762724	1.00[EUR][1000 genomes]
rs73762751	1.00[EUR][1000 genomes]
rs73762754	1.00[EUR][1000 genomes]
rs73762755	1.00[EUR][1000 genomes]
rs73766319	1.00[EUR][1000 genomes]
rs9487067	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487075	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487091	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109654000-109669400	Weak transcription	Small Intestine	intestine
3	chr6:109654200-109671000	Weak transcription	Spleen	Spleen
4	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:109654400-109668800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:109657800-109671000	Weak transcription	Lung	lung
8	chr6:109658400-109669200	Weak transcription	Liver	Liver
9	chr6:109658600-109668200	Weak transcription	Colonic Mucosa	Colon
10	chr6:109658600-109670600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:109658800-109670600	Weak transcription	Right Atrium	heart
12	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
13	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
14	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:109660600-109665800	Enhancers	Fetal Muscle Leg	muscle
16	chr6:109660600-109666000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:109660800-109666000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:109661200-109668600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:109661400-109671400	Weak transcription	Fetal Thymus	thymus
20	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:109662800-109669600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:109662800-109670600	Weak transcription	Aorta	Aorta
23	chr6:109662800-109670600	Weak transcription	Right Ventricle	heart
24	chr6:109662800-109671000	Weak transcription	Psoas Muscle	Psoas
25	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:109663000-109670600	Weak transcription	Adipose Nuclei	Adipose
27	chr6:109663400-109665600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:109663400-109665800	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:109663600-109665600	Enhancers	Gastric	stomach
30	chr6:109663600-109666000	Enhancers	Stomach Mucosa	stomach
31	chr6:109663600-109666400	Enhancers	Placenta	Placenta
32	chr6:109663800-109665600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr6:109664000-109669000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:109664000-109670800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:109664200-109669000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:109664200-109670800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:109664200-109672800	Weak transcription	HSMM	muscle
38	chr6:109664400-109668000	Weak transcription	Brain Substantia Nigra	brain
39	chr6:109664400-109668000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:109664400-109668600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:109664400-109670400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:109664400-109670600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:109664400-109671000	Weak transcription	Left Ventricle	heart
44	chr6:109665000-109665600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr6:109665000-109665600	Enhancers	Pancreas	Pancrea
46	chr6:109665200-109665600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:109665200-109665600	Enhancers	Fetal Intestine Small	intestine
48	chr6:109665200-109665800	Enhancers	Fetal Intestine Large	intestine
49	chr6:109665200-109669000	Weak transcription	K562	blood
50	chr6:109665400-109665600	Enhancers	Duodenum Mucosa	Duodenum

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