Variant report

Variant	rs34369365
Chromosome Location	chr6:109663491-109663492
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109656032..109659893-chr6:109659967..109664099,6	MCF-7	breast:
2	chr6:109662626..109665384-chr6:109701229..109703998,3	MCF-7	breast:
3	chr6:109615706..109617299-chr6:109661071..109663820,2	MCF-7	breast:
4	chr6:109656306..109660874-chr6:109662231..109666521,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1322814	1.00[EUR][1000 genomes]
rs2232448	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28571794	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655743	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56166063	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56227394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57767615	1.00[EUR][1000 genomes]
rs60129681	1.00[EUR][1000 genomes]
rs61303854	1.00[EUR][1000 genomes]
rs61426096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907946	1.00[EUR][1000 genomes]
rs6936036	1.00[EUR][1000 genomes]
rs73762703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762704	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762708	1.00[EUR][1000 genomes]
rs73762709	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762713	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762715	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762724	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762751	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762754	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762755	1.00[EUR][1000 genomes]
rs73766319	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480932	1.00[EUR][1000 genomes]
rs9487067	1.00[EUR][1000 genomes]
rs9487072	1.00[EUR][1000 genomes]
rs9487075	1.00[EUR][1000 genomes]
rs9487091	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109654000-109669400	Weak transcription	Small Intestine	intestine
3	chr6:109654200-109671000	Weak transcription	Spleen	Spleen
4	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:109654400-109668800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:109657800-109671000	Weak transcription	Lung	lung
8	chr6:109658200-109663600	Weak transcription	Left Ventricle	heart
9	chr6:109658400-109665200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:109658400-109669200	Weak transcription	Liver	Liver
11	chr6:109658600-109668200	Weak transcription	Colonic Mucosa	Colon
12	chr6:109658600-109670600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:109658800-109663600	Weak transcription	Gastric	stomach
14	chr6:109658800-109663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:109658800-109670600	Weak transcription	Right Atrium	heart
16	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
17	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
18	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:109660600-109665800	Enhancers	Fetal Muscle Leg	muscle
20	chr6:109660600-109666000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:109660800-109666000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:109661200-109665000	Weak transcription	Pancreas	Pancrea
23	chr6:109661200-109668600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:109661400-109671400	Weak transcription	Fetal Thymus	thymus
25	chr6:109661600-109663600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:109661600-109663600	Weak transcription	Placenta	Placenta
27	chr6:109661800-109663600	Weak transcription	Stomach Mucosa	stomach
28	chr6:109662000-109663600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:109662400-109664400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:109662600-109663600	Weak transcription	HSMM	muscle
31	chr6:109662600-109664200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:109662600-109665000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:109662800-109663800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:109662800-109663800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:109662800-109669600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:109662800-109670600	Weak transcription	Aorta	Aorta
38	chr6:109662800-109670600	Weak transcription	Right Ventricle	heart
39	chr6:109662800-109671000	Weak transcription	Psoas Muscle	Psoas
40	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:109663000-109670600	Weak transcription	Adipose Nuclei	Adipose
42	chr6:109663200-109663600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:109663400-109664200	Enhancers	HSMMtube	muscle
44	chr6:109663400-109665200	Enhancers	K562	blood
45	chr6:109663400-109665600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:109663400-109665800	Enhancers	Fetal Muscle Trunk	muscle

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