Variant report

Variant	rs736830
Chromosome Location	chr6:109713299-109713300
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109710996..109712933-chr6:109713290..109714925,2	MCF-7	breast:
2	chr6:109701817..109708859-chr6:109709273..109715844,12	K562	blood:
3	chr6:109711182..109714084-chr6:109716397..109718567,2	K562	blood:
4	chr6:109711604..109714204-chr6:109721732..109723355,2	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10457192	0.88[CEU][hapmap];0.80[GIH][hapmap]
rs10457194	0.87[CEU][hapmap]
rs10457195	0.88[CEU][hapmap]
rs1046943	0.85[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes]
rs1054607	0.85[YRI][hapmap]
rs1074765	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1074766	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872033	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11153183	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs11251	0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs11754455	0.87[CEU][hapmap]
rs11755641	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs12194061	0.87[CEU][hapmap]
rs12197180	0.88[CEU][hapmap]
rs12198938	0.88[CEU][hapmap]
rs12199154	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs12212476	0.87[CEU][hapmap]
rs12214147	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12529733	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13219952	0.95[EUR][1000 genomes]
rs13220915	0.87[CEU][hapmap]
rs1406899	0.88[CEU][hapmap]
rs1476387	0.93[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1521907	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17070580	0.84[MKK][hapmap]
rs17070591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17070656	0.80[YRI][hapmap]
rs1853330	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1885690	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1885691	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2024850	0.88[CEU][hapmap]
rs2024853	0.88[CEU][hapmap]
rs2211288	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2236084	0.85[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes]
rs2277113	0.85[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs2277114	0.88[CEU][hapmap];0.80[GIH][hapmap]
rs2884037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35146243	0.88[EUR][1000 genomes]
rs3734652	0.85[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.80[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes]
rs3757230	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757231	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757235	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778474	0.96[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs3778478	0.88[EUR][1000 genomes]
rs3799842	0.96[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.80[YRI][hapmap]
rs3818933	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4636056	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945831	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4946967	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs4946970	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946976	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs58644322	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59597139	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914216	0.94[EUR][1000 genomes]
rs6920372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920712	0.85[YRI][hapmap]
rs6920962	0.91[CHB][hapmap];0.86[YRI][hapmap]
rs6939548	0.88[EUR][1000 genomes]
rs6939953	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs699700	0.94[EUR][1000 genomes]
rs730089	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748669	0.96[CEU][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs7751582	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7754650	0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs7755941	0.87[CEU][hapmap]
rs7768973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7773950	0.88[CEU][hapmap]
rs8465	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs910730	0.85[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes]
rs9320286	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320287	0.84[MKK][hapmap]
rs9372213	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9386799	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9480947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480949	0.93[EUR][1000 genomes]
rs9480956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480958	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9487064	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9487066	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9487069	0.94[EUR][1000 genomes]
rs9487070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9487076	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487085	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487094	0.84[MKK][hapmap]
rs9487103	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs974034	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9791241	0.85[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs736830	RP11-425D10.10	cis	Whole Blood	GTEx
rs736830	ZBTB24	cis	cerebellum	SCAN
rs736830	SMPD2	cis	multi-tissue	Pritchard
rs736830	CD164	cis	parietal	SCAN
rs736830	AKD1	cis	parietal	SCAN
rs736830	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs736830	AKD1	cis	cerebellum	SCAN
rs736830	FIG4	cis	cerebellum	SCAN
rs736830	SMPD2	cis	parietal	SCAN
rs736830	FIG4	cis	parietal	SCAN
rs736830	SMPD2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706200-109717200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:109706200-109717800	Weak transcription	Thymus	Thymus
4	chr6:109706400-109715000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:109706400-109718400	Weak transcription	Primary B cells from cord blood	blood
6	chr6:109706600-109714800	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:109706600-109717400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:109706800-109715600	Weak transcription	Gastric	stomach
10	chr6:109706800-109718600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
12	chr6:109709800-109714800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:109710200-109713400	Enhancers	Fetal Intestine Large	intestine
14	chr6:109710200-109714800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:109711000-109713600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:109711400-109713400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:109711400-109714800	Weak transcription	Brain Substantia Nigra	brain
18	chr6:109711400-109714800	Weak transcription	HMEC	breast
19	chr6:109711800-109725000	Weak transcription	Brain Anterior Caudate	brain
20	chr6:109712000-109714800	Weak transcription	Stomach Mucosa	stomach
21	chr6:109712600-109713400	Enhancers	K562	blood
22	chr6:109712800-109713400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:109712800-109714800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:109712800-109715400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:109712800-109716400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
27	chr6:109713000-109714200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:109713000-109714800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:109713000-109714800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:109713000-109715000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:109713000-109715000	Weak transcription	NHEK	skin
32	chr6:109713200-109713400	Enhancers	Osteobl	bone
33	chr6:109713200-109714400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:109713200-109715000	Weak transcription	Hela-S3	cervix

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