The 2.0 version of rSNPBase

Variant report

Variant rs13219952
Chromosome Location chr6:109712287-109712288
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:109705000-109745200 Weak transcription Fetal Kidney kidney
2 chr6:109706200-109717200 Weak transcription Brain Angular Gyrus brain
3 chr6:109706200-109717800 Weak transcription Thymus Thymus
4 chr6:109706400-109715000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr6:109706400-109718400 Weak transcription Primary B cells from cord blood blood
6 chr6:109706600-109714800 Weak transcription Brain Hippocampus Middle brain
7 chr6:109706600-109717400 Weak transcription Primary hematopoietic stem cells blood
8 chr6:109706600-109735800 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr6:109706800-109712600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr6:109706800-109715600 Weak transcription Gastric stomach
11 chr6:109706800-109718600 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr6:109707000-109755400 Weak transcription Fetal Intestine Small intestine
13 chr6:109709800-109714800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr6:109710200-109713400 Enhancers Fetal Intestine Large intestine
15 chr6:109710200-109714800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr6:109710800-109712800 Enhancers Primary neutrophils fromperipheralblood blood
17 chr6:109710800-109712800 Enhancers Adipose Nuclei Adipose
18 chr6:109710800-109712800 Enhancers Placenta Placenta
19 chr6:109710800-109713000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr6:109710800-109713000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
21 chr6:109710800-109713000 Enhancers NHEK skin
22 chr6:109710800-109713200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr6:109711000-109712800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr6:109711000-109713600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr6:109711200-109712800 Enhancers Fetal Muscle Leg muscle
26 chr6:109711200-109713000 Enhancers Primary monocytes fromperipheralblood blood
27 chr6:109711400-109713000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr6:109711400-109713400 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr6:109711400-109714800 Weak transcription Brain Substantia Nigra brain
30 chr6:109711400-109714800 Weak transcription HMEC breast
31 chr6:109711600-109713000 Enhancers Skeletal Muscle Female skeletal muscle
32 chr6:109711800-109712400 Weak transcription Pancreas Pancrea
33 chr6:109711800-109712600 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr6:109711800-109712600 Weak transcription Left Ventricle heart
35 chr6:109711800-109725000 Weak transcription Brain Anterior Caudate brain
36 chr6:109712000-109712600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr6:109712000-109713200 Enhancers Hela-S3 cervix
38 chr6:109712000-109713200 Weak transcription Osteobl bone
39 chr6:109712000-109714800 Weak transcription Stomach Mucosa stomach
40 chr6:109712200-109712600 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr6:109712200-109713000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr6:109712200-109713000 Enhancers Monocytes-CD14+_RO01746 blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015