Variant report

Variant	rs9480958
Chromosome Location	chr6:109754171-109754172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAL1	chr6:109754015-109754357	K562	blood:	n/a	n/a
2	CUX1	chr6:109754048-109754213	K562	blood:	n/a	n/a
3	EP300	chr6:109754036-109754267	K562	blood:	n/a	n/a
4	ZNF384	chr6:109754046-109754357	K562	blood:	n/a	n/a
5	RCOR1	chr6:109754083-109754251	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109752212..109757242-chr6:109759553..109764133,7	MCF-7	breast:
2	chr6:109753662..109755641-chr6:109776640..109778419,2	K562	blood:
3	chr6:109750853..109754544-chr6:109754754..109757262,3	MCF-7	breast:
4	chr6:109747606..109757389-chr6:109757828..109761794,11	K562	blood:

No data

Variant related genes	Relation type
PPIL6	TF binding region
ENSG00000185250	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000135596	Chromatin interaction
ENSG00000239160	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1046943	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1074765	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1074766	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10872033	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11251	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214147	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12529733	0.88[EUR][1000 genomes]
rs13219952	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1476387	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1521907	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17070591	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1853330	0.85[EUR][1000 genomes]
rs1885690	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1885691	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1998811	0.80[EUR][1000 genomes]
rs2211288	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2236084	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2277113	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2884037	0.93[EUR][1000 genomes]
rs35146243	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35260632	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3734652	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3757230	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3757231	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3757235	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3778474	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3778478	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3799842	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3818933	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4636056	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4945831	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4946967	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4946970	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4946976	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58644322	0.93[EUR][1000 genomes]
rs59597139	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6914216	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6920372	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6939548	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6939953	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs699700	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs730089	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs736830	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs746794	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7748669	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751582	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7754650	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7768973	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8465	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs910730	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9320286	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372213	0.82[EUR][1000 genomes]
rs9398202	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9480947	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9480949	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480956	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9487064	0.88[EUR][1000 genomes]
rs9487066	0.86[EUR][1000 genomes]
rs9487069	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9487070	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9487076	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9487084	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9487085	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9487103	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs974034	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9791241	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9480958	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs9480958	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs9480958	C6orf199	Cis_1M	lymphoblastoid	RTeQTL
rs9480958	RP11-425D10.10	cis	Whole Blood	GTEx
rs9480958	MICAL1	cis	Artery Tibial	GTEx
rs9480958	SMPD2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
3	chr6:109725800-109760800	Weak transcription	Brain Anterior Caudate	brain
4	chr6:109736600-109760800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:109740400-109754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:109745600-109760800	Weak transcription	Gastric	stomach
7	chr6:109750800-109755000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:109750800-109760200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:109750800-109760400	Weak transcription	Ovary	ovary
10	chr6:109750800-109760800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:109751000-109754600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:109751000-109760200	Weak transcription	Osteobl	bone
13	chr6:109751000-109760800	Weak transcription	Right Atrium	heart
14	chr6:109751200-109760400	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:109751200-109761400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:109751400-109760800	Weak transcription	Fetal Stomach	stomach
17	chr6:109751600-109760400	Weak transcription	NHEK	skin
18	chr6:109753800-109754200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:109753800-109754800	Enhancers	K562	blood
20	chr6:109753800-109755200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:109753800-109760800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:109754000-109754400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:109754000-109760800	Weak transcription	Pancreas	Pancrea

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