Variant report

Variant	rs6914216
Chromosome Location	chr6:109723117-109723118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109711604..109714204-chr6:109721732..109723355,2	K562	blood:
2	chr6:109716495..109718176-chr6:109722543..109725492,2	K562	blood:
3	chr6:109722698..109724840-chr6:109727938..109730265,2	K562	blood:
4	chr6:109716676..109719129-chr6:109720969..109724043,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1046943	0.86[EUR][1000 genomes]
rs1074765	0.93[EUR][1000 genomes]
rs1074766	0.91[EUR][1000 genomes]
rs10872033	0.91[EUR][1000 genomes]
rs11251	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12214147	0.91[EUR][1000 genomes]
rs12529733	0.87[EUR][1000 genomes]
rs13219952	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1476387	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1521907	0.92[EUR][1000 genomes]
rs17070591	0.91[EUR][1000 genomes]
rs1853330	0.83[EUR][1000 genomes]
rs1885690	0.92[EUR][1000 genomes]
rs1885691	0.94[EUR][1000 genomes]
rs2211288	0.94[EUR][1000 genomes]
rs2236084	0.86[EUR][1000 genomes]
rs2277113	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2884037	0.92[EUR][1000 genomes]
rs35146243	0.85[EUR][1000 genomes]
rs3734652	0.86[EUR][1000 genomes]
rs3757230	0.93[EUR][1000 genomes]
rs3757231	0.94[EUR][1000 genomes]
rs3757235	0.94[EUR][1000 genomes]
rs3778474	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3778478	0.86[EUR][1000 genomes]
rs3818933	0.93[EUR][1000 genomes]
rs4636056	0.91[EUR][1000 genomes]
rs4945831	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4946967	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4946970	0.94[EUR][1000 genomes]
rs4946976	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58644322	0.92[EUR][1000 genomes]
rs59597139	0.87[EUR][1000 genomes]
rs6920372	0.93[EUR][1000 genomes]
rs6939548	0.86[EUR][1000 genomes]
rs6939953	0.94[EUR][1000 genomes]
rs699700	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs730089	0.94[EUR][1000 genomes]
rs736830	0.94[EUR][1000 genomes]
rs746794	0.94[EUR][1000 genomes]
rs7748669	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7751582	0.91[EUR][1000 genomes]
rs7754650	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768973	0.91[EUR][1000 genomes]
rs8465	0.93[EUR][1000 genomes]
rs910730	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9320286	0.93[EUR][1000 genomes]
rs9372213	0.81[EUR][1000 genomes]
rs9480947	0.94[EUR][1000 genomes]
rs9480949	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9480956	0.91[EUR][1000 genomes]
rs9480958	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487064	0.92[EUR][1000 genomes]
rs9487066	0.90[EUR][1000 genomes]
rs9487069	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487070	0.93[EUR][1000 genomes]
rs9487076	0.93[EUR][1000 genomes]
rs9487084	0.94[EUR][1000 genomes]
rs9487085	0.92[EUR][1000 genomes]
rs9487103	0.91[EUR][1000 genomes]
rs974034	0.93[EUR][1000 genomes]
rs9791241	0.86[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6914216	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs6914216	SMPD2	cis	Whole Blood	GTEx
rs6914216	AK9	cis	Nerve Tibial	GTEx
rs6914216	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs6914216	C6orf199	Cis_1M	lymphoblastoid	RTeQTL
rs6914216	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:109711800-109725000	Weak transcription	Brain Anterior Caudate	brain
5	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
6	chr6:109715400-109730400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:109716200-109723600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
9	chr6:109722000-109725000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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