Variant report

Variant	rs1521907
Chromosome Location	chr6:109675489-109675490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109670785..109672543-chr6:109675154..109677381,2	MCF-7	breast:
2	chr6:109664466..109666759-chr6:109674016..109675945,2	MCF-7	breast:
3	chr6:109669396..109675577-chr6:109699158..109705270,9	K562	blood:
4	chr6:109675179..109679333-chr6:109679553..109683129,6	K562	blood:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10457192	0.88[CEU][hapmap]
rs10457194	0.88[CEU][hapmap]
rs10457195	0.88[CEU][hapmap]
rs1046943	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs1074765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1074766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10872033	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11153183	0.88[CEU][hapmap]
rs11251	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs11754455	0.88[CEU][hapmap]
rs12194061	0.88[CEU][hapmap]
rs12197180	0.88[CEU][hapmap]
rs12198938	0.88[CEU][hapmap]
rs12199154	0.88[CEU][hapmap]
rs12212476	0.88[CEU][hapmap]
rs12214147	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12529733	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13219952	0.93[EUR][1000 genomes]
rs13220915	0.88[CEU][hapmap]
rs1406899	0.88[CEU][hapmap]
rs1476387	1.00[CEU][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17070591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17070656	0.83[YRI][hapmap]
rs1853330	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1885690	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1885691	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2024850	0.88[CEU][hapmap]
rs2024853	0.88[CEU][hapmap]
rs2211288	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2236084	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs2277113	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[EUR][1000 genomes]
rs2277114	0.88[CEU][hapmap]
rs2884037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35146243	0.86[EUR][1000 genomes]
rs3734652	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs3757230	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757231	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3778474	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs3778478	0.86[EUR][1000 genomes]
rs3799842	0.96[CEU][hapmap]
rs3818933	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4636056	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945831	0.93[EUR][1000 genomes]
rs4946967	0.96[CEU][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes]
rs4946970	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946976	0.88[EUR][1000 genomes]
rs58644322	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59597139	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6914216	0.92[EUR][1000 genomes]
rs6920372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920962	0.92[CHB][hapmap]
rs6939548	0.86[EUR][1000 genomes]
rs6939953	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699700	0.95[EUR][1000 genomes]
rs730089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs736830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs746794	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748669	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7751582	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754650	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7755941	0.87[CEU][hapmap]
rs7768973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773950	0.88[CEU][hapmap]
rs8465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910730	0.96[CEU][hapmap];0.80[YRI][hapmap];0.89[EUR][1000 genomes]
rs9320286	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372213	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9386799	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9480947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480949	0.91[EUR][1000 genomes]
rs9480956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480958	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9487064	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487066	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487069	0.95[EUR][1000 genomes]
rs9487070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487084	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487085	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs974034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791241	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
3	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
4	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:109665600-109677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:109665600-109680400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:109666000-109678000	Weak transcription	Fetal Kidney	kidney
9	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:109669600-109677000	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:109669600-109677200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:109669800-109677200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:109671000-109677800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:109671000-109681600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:109671200-109677000	Weak transcription	Aorta	Aorta
16	chr6:109671200-109677200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:109671200-109680200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:109671200-109681400	Weak transcription	Brain Anterior Caudate	brain
19	chr6:109671400-109675600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:109671400-109677200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:109671400-109677200	Weak transcription	A549	lung
22	chr6:109671400-109677600	Weak transcription	HepG2	liver
23	chr6:109671400-109677800	Weak transcription	Fetal Lung	lung
24	chr6:109671600-109676400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:109671600-109677000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:109671600-109678200	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:109672000-109675600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:109672000-109683000	Weak transcription	Esophagus	oesophagus
29	chr6:109672200-109677000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:109672600-109677400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:109672600-109677800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:109672800-109675600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:109672800-109677200	Weak transcription	Lung	lung
34	chr6:109673000-109677400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:109673000-109680200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:109673200-109681600	Weak transcription	Pancreas	Pancrea
37	chr6:109673400-109677200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:109673400-109677200	Weak transcription	Brain Substantia Nigra	brain
39	chr6:109673400-109677800	Weak transcription	NHLF	lung
40	chr6:109673600-109676400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:109673600-109676800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:109673600-109677200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:109673600-109677200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:109673600-109677600	Weak transcription	NHDF-Ad	bronchial
45	chr6:109673600-109678000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:109673600-109678000	Weak transcription	HSMMtube	muscle
47	chr6:109673600-109680400	Weak transcription	Spleen	Spleen
48	chr6:109673600-109681800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:109673600-109683000	Weak transcription	Psoas Muscle	Psoas
50	chr6:109673600-109683200	Weak transcription	HMEC	breast

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