Variant report

Variant	rs9372213
Chromosome Location	chr6:109692188-109692189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109667580..109670112-chr6:109691835..109693593,2	MCF-7	breast:
2	chr6:109680156..109682689-chr6:109691352..109692864,2	K562	blood:
3	chr6:109692038..109693795-chr6:110710015..110712493,2	K562	blood:
4	chr6:109626552..109629448-chr6:109691931..109694820,2	K562	blood:
5	chr6:109654230..109656152-chr6:109690482..109693249,2	MCF-7	breast:
6	chr6:109666475..109669130-chr6:109690489..109693013,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD164-1	chr6:109691614-109694072	NONHSAT114396

No data

Variant related genes	Relation type
ENSG00000201023	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1046943	0.81[CEU][hapmap];0.87[GIH][hapmap]
rs1074765	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1074766	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10872033	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11251	0.83[GIH][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs12194431	0.94[JPT][hapmap]
rs12214147	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12529733	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1321208	0.87[JPT][hapmap]
rs13219952	0.82[EUR][1000 genomes]
rs1322815	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1476387	0.81[CEU][hapmap];0.87[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs1521907	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17070591	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1853330	0.90[AMR][1000 genomes]
rs1885690	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1885691	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2211288	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2236084	0.81[CEU][hapmap];0.87[GIH][hapmap]
rs2277113	0.81[CEU][hapmap];0.87[GIH][hapmap]
rs2884037	0.81[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3734652	0.81[CEU][hapmap];0.87[GIH][hapmap]
rs3757230	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3757231	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3757235	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3778474	0.84[EUR][1000 genomes]
rs3799842	0.85[GIH][hapmap]
rs3818933	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4636056	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4945831	0.82[EUR][1000 genomes]
rs4946967	0.84[EUR][1000 genomes]
rs4946970	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58644322	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6914216	0.81[EUR][1000 genomes]
rs6920372	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6939953	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs699700	0.84[EUR][1000 genomes]
rs730089	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs736830	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs746794	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7748669	0.81[TSI][hapmap]
rs7751582	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7753224	0.86[YRI][hapmap]
rs7754650	0.83[GIH][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs7757895	0.94[JPT][hapmap]
rs7768973	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8465	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs910730	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs9320286	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9384712	0.94[JPT][hapmap]
rs9386799	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9398202	0.96[CEU][hapmap];0.86[YRI][hapmap];0.87[EUR][1000 genomes]
rs9480947	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9480949	0.80[EUR][1000 genomes]
rs9480956	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9480958	0.82[EUR][1000 genomes]
rs9487064	0.82[EUR][1000 genomes]
rs9487066	0.81[EUR][1000 genomes]
rs9487069	0.84[EUR][1000 genomes]
rs9487070	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9487076	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9487084	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9487085	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9487103	0.81[CEU][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9487128	0.86[YRI][hapmap]
rs974034	0.81[CEU][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9791241	0.81[CEU][hapmap];0.87[GIH][hapmap]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs9372213	AKD1	cis	cerebellum	SCAN
rs9372213	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs9372213	SMPD2	cis	multi-tissue	Pritchard
rs9372213	ZBTB24	cis	cerebellum	SCAN
rs9372213	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs9372213	MICAL1	cis	Artery Tibial	GTEx
rs9372213	ARMC2	cis	cerebellum	SCAN
rs9372213	SMPD2	cis	parietal	SCAN
rs9372213	PPIL6	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109675000-109692600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:109675000-109693200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
6	chr6:109675200-109693200	Strong transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
9	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:109678200-109694600	Strong transcription	Fetal Thymus	thymus
12	chr6:109678200-109695200	Strong transcription	Duodenum Mucosa	Duodenum
13	chr6:109678400-109694400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:109678400-109694400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:109678600-109693200	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:109678600-109693400	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:109678800-109695400	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr6:109678800-109699000	Strong transcription	Dnd41	blood
19	chr6:109679000-109693200	Strong transcription	K562	blood
20	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:109680400-109697200	Weak transcription	Fetal Brain Male	brain
23	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:109680800-109694400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr6:109682400-109692600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:109682600-109700800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:109683200-109699800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:109683600-109692800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:109683800-109693400	Strong transcription	Primary B cells from cord blood	blood
30	chr6:109683800-109700600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:109684000-109692800	Weak transcription	NHLF	lung
32	chr6:109684000-109693200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:109684000-109693400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr6:109684000-109693400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:109684000-109693400	Weak transcription	Stomach Mucosa	stomach
36	chr6:109684000-109694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:109684000-109694600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:109684000-109694600	Weak transcription	Aorta	Aorta
39	chr6:109684000-109694600	Weak transcription	Fetal Heart	heart
40	chr6:109684000-109694600	Weak transcription	Gastric	stomach
41	chr6:109684000-109694600	Weak transcription	Ovary	ovary
42	chr6:109684000-109694600	Weak transcription	Pancreas	Pancrea
43	chr6:109684000-109694800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:109684000-109695400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:109684000-109695800	Weak transcription	Spleen	Spleen
46	chr6:109684000-109702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:109684200-109693600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr6:109684200-109694600	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:109684200-109694600	Weak transcription	Lung	lung
50	chr6:109684200-109695600	Weak transcription	Small Intestine	intestine

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