Variant report

Variant	rs9384712
Chromosome Location	chr6:109871831-109871832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:109871787-109871837	SK-N-SH	brain:	n/a
2	chr6:109871787-109871837	HMEC	breast:	n/a
3	chr6:109871787-109871837	BJ	skin:	n/a
4	chr6:109871787-109871837	NHBE	bronchial:	n/a
5	chr6:109871787-109871837	Jurkat	blood:	n/a
6	chr6:109871787-109871837	RPTEC	kidney:	n/a
7	chr6:109871787-109871837	HRE	kidney:	n/a
8	chr6:109871787-109871837	HNPCEpiC	eye:	n/a
9	chr6:109871787-109871837	HUVEC	blood vessel:	n/a
10	chr6:109871787-109871837	LNCaP	prostate:	n/a
11	chr6:109871787-109871837	NT2-D1	testis:	n/a
12	chr6:109871787-109871837	AG10803	skin:	n/a
13	chr6:109871787-109871837	SK-N-MC	brain:	n/a
14	chr6:109871787-109871837	AG04449	skin:	fetal
15	chr6:109871787-109871837	SKMC	muscle:	n/a
16	chr6:109871787-109871837	NHDF-neo	bronchial:	n/a
17	chr6:109871787-109871837	HCM	heart:	n/a
18	chr6:109871787-109871837	HL-60	blood:	n/a
19	chr6:109871787-109871837	HAEpiC	amniotic membrane:	n/a
20	chr6:109871787-109871837	K562	blood:	n/a
21	chr6:109871787-109871837	PFSK-1	brain:	n/a
22	chr6:109871787-109871837	HCPEpiC	choroid plexus:	n/a
23	chr6:109871787-109871837	BE2_C	brain:	n/a
24	chr6:109871787-109871837	AG09309	skin:	n/a
25	chr6:109871787-109871837	NH-A	brain:	n/a
26	chr6:109871787-109871837	AG09319	gingival:	n/a
27	chr6:109871787-109871837	ECC-1	luminal epithelium:	n/a
28	chr6:109871787-109871837	Hela-S3	cervix:	n/a
29	chr6:109871787-109871837	GM06990	blood:	n/a
30	chr6:109871787-109871837	AoSMC	blood vessel:	n/a
31	chr6:109871787-109871837	H1-hESC	embryonic stem cell:	embryo
32	chr6:109871787-109871837	PANC-1	pancreas:	n/a
33	chr6:109871787-109871837	MCF10A-Er-Src	breast:	n/a
34	chr6:109871787-109871837	HCF	heart:	n/a
35	chr6:109871787-109871837	SK-N-SH_RA	brain:	n/a
36	chr6:109871787-109871837	HPAEpiC	pulmonary alveolar:	n/a
37	chr6:109871787-109871837	GM12892	blood:	n/a
38	chr6:109871787-109871837	HEEpiC	esophagus:	n/a
39	chr6:109871787-109871837	NB4	blood:	n/a
40	chr6:109871787-109871837	ProgFib	skin:	n/a
41	chr6:109871787-109871837	MCF-7	breast:	n/a
42	chr6:109871787-109871837	U87	brain:	n/a
43	chr6:109871787-109871837	GM12878	blood:	n/a
44	chr6:109871787-109871837	GM12891	blood:	n/a
45	chr6:109871787-109871837	HIPEpiC	eye:	n/a
46	chr6:109871787-109871837	HCT-116	colon:	n/a
47	chr6:109871787-109871837	A549	lung:	n/a
48	chr6:109871787-109871837	T-47D	breast:	n/a
49	chr6:109871787-109871837	Hepatocyte	liver:	n/a
50	chr6:109871787-109871837	CMK	blood:	n/a

No data

Variant related genes	Relation type
AK9	CpG island

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1054607	0.83[CEU][hapmap]
rs10872036	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10872037	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10872038	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1096137	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1096141	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1103996	0.95[CEU][hapmap]
rs11153186	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11153196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1115978	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12175588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191099	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12209401	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12216333	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321206	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1321208	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1322815	0.91[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1406955	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070673	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1853030	0.82[EUR][1000 genomes]
rs1923057	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2145145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2884037	0.82[JPT][hapmap]
rs2884063	0.80[EUR][1000 genomes]
rs2884130	0.80[EUR][1000 genomes]
rs3799852	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs3823234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945834	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4946985	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946990	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4947007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4947013	0.95[CEU][hapmap]
rs4947014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62435962	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6899688	0.80[EUR][1000 genomes]
rs6899915	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs6906729	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6915268	0.83[EUR][1000 genomes]
rs6920712	0.83[CEU][hapmap]
rs6921615	1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs6933962	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6936853	0.81[ASN][1000 genomes]
rs6941211	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7757153	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7763229	0.80[EUR][1000 genomes]
rs7764711	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs7771150	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7772817	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7775414	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs829810	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs829811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs865503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs866685	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285400	0.80[EUR][1000 genomes]
rs9320293	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320301	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372213	0.94[JPT][hapmap]
rs9372223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9374104	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374105	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9374112	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9384719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386809	0.83[EUR][1000 genomes]
rs9386811	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386815	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9386829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398212	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9400292	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400298	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400302	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9480972	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487132	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs9487161	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487181	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487182	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9766863	0.95[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109852200-109878400	Weak transcription	Pancreas	Pancrea
2	chr6:109859200-109873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:109862200-109878200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:109862200-109878400	Weak transcription	Thymus	Thymus
5	chr6:109867000-109885800	Weak transcription	Ovary	ovary
6	chr6:109870600-109872000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:109870600-109878400	Weak transcription	Left Ventricle	heart
8	chr6:109870600-109878800	Weak transcription	Primary T cells from cord blood	blood
9	chr6:109870800-109873000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:109870800-109873200	Weak transcription	Primary B cells from cord blood	blood
11	chr6:109871400-109884000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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