Variant report

Variant	rs2884063
Chromosome Location	chr6:109835138-109835139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10872036	0.90[EUR][1000 genomes]
rs10872037	0.89[EUR][1000 genomes]
rs10872038	0.89[EUR][1000 genomes]
rs1103996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11153186	0.83[EUR][1000 genomes]
rs11153196	0.95[CEU][hapmap]
rs12175588	0.95[CEU][hapmap]
rs12191099	0.80[EUR][1000 genomes]
rs12194431	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12209401	0.80[EUR][1000 genomes]
rs1321206	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1321208	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1322815	0.86[CEU][hapmap]
rs1406955	0.95[CEU][hapmap]
rs17070673	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1853030	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025149	0.95[CEU][hapmap]
rs2145145	0.95[CEU][hapmap]
rs3823234	0.95[CEU][hapmap]
rs4946985	0.80[EUR][1000 genomes]
rs4947005	0.95[CEU][hapmap]
rs4947007	0.95[CEU][hapmap]
rs4947013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4947014	0.95[CEU][hapmap]
rs6906729	0.94[CEU][hapmap]
rs6915268	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7757895	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs7759120	0.95[CEU][hapmap]
rs829811	0.95[CEU][hapmap]
rs865503	0.95[CEU][hapmap]
rs9320293	0.83[EUR][1000 genomes]
rs9372223	0.95[CEU][hapmap]
rs9374104	0.80[EUR][1000 genomes]
rs9374111	0.95[CEU][hapmap]
rs9384712	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs9384719	0.95[CEU][hapmap]
rs9386809	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386811	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9386819	0.95[CEU][hapmap]
rs9386822	0.95[CEU][hapmap]
rs9386828	0.95[CEU][hapmap]
rs9386829	0.95[CEU][hapmap]
rs9398210	0.95[CEU][hapmap]
rs9400292	0.80[EUR][1000 genomes]
rs9400298	0.80[EUR][1000 genomes]
rs9480972	0.83[EUR][1000 genomes]
rs9480980	0.95[CEU][hapmap]
rs9487132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487161	0.83[CEU][hapmap]
rs9766863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109815800-109837200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:109825000-109837000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:109832000-109836400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:109833000-109835200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:109833200-109835400	Enhancers	HUVEC	blood vessel
6	chr6:109834000-109836400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:109834200-109835200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:109834200-109836000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:109834200-109836400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:109834400-109835600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:109834400-109836200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:109834400-109837600	Enhancers	Osteobl	bone
13	chr6:109834600-109835400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:109834600-109835400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:109834600-109835400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:109834600-109835400	Enhancers	HSMM	muscle
17	chr6:109834600-109835600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:109834600-109835600	Enhancers	HSMMtube	muscle
19	chr6:109834600-109836200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:109834600-109836200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:109834800-109835200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr6:109834800-109835200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:109834800-109835200	Enhancers	Hela-S3	cervix
24	chr6:109834800-109835400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:109834800-109835400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:109834800-109835400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:109834800-109835400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:109834800-109835400	Enhancers	Placenta	Placenta
29	chr6:109834800-109835600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr6:109834800-109836600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr6:109835000-109835200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:109835000-109835400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:109835000-109835400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:109835000-109835400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:109835000-109835600	Enhancers	NHDF-Ad	bronchial

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