Variant report

Variant	rs1853030
Chromosome Location	chr6:109825880-109825881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10872036	0.84[EUR][1000 genomes]
rs10872037	0.83[EUR][1000 genomes]
rs10872038	0.83[EUR][1000 genomes]
rs11153196	0.80[EUR][1000 genomes]
rs1115978	0.80[EUR][1000 genomes]
rs12191099	0.82[EUR][1000 genomes]
rs12194431	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1321206	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1321208	0.84[EUR][1000 genomes]
rs17070673	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2884063	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945834	0.80[EUR][1000 genomes]
rs4946985	0.82[EUR][1000 genomes]
rs4946990	0.80[EUR][1000 genomes]
rs6915268	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7757895	0.82[EUR][1000 genomes]
rs9320301	0.80[EUR][1000 genomes]
rs9374104	0.82[EUR][1000 genomes]
rs9374105	0.80[EUR][1000 genomes]
rs9384712	0.82[EUR][1000 genomes]
rs9386809	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386811	0.84[EUR][1000 genomes]
rs9386815	0.81[EUR][1000 genomes]
rs9386819	0.80[EUR][1000 genomes]
rs9400292	0.82[EUR][1000 genomes]
rs9400298	0.82[EUR][1000 genomes]
rs9400302	0.80[EUR][1000 genomes]
rs9480980	0.80[EUR][1000 genomes]
rs9487132	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487161	0.80[EUR][1000 genomes]
rs9766863	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109815800-109837200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:109819800-109828200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:109819800-109828200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:109822400-109826000	Enhancers	Placenta	Placenta
5	chr6:109823400-109834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:109823800-109828200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:109824400-109826200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:109825000-109826200	Weak transcription	HSMM	muscle
9	chr6:109825000-109829200	Weak transcription	Fetal Lung	lung
10	chr6:109825000-109837000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:109825200-109828600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:109825200-109828600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:109825200-109828800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:109825200-109829000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:109825200-109834600	Weak transcription	HSMMtube	muscle
16	chr6:109825400-109828400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:109825400-109828800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:109825400-109830800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:109825600-109826000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:109825800-109826000	Enhancers	Lung	lung

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